RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 CYTH4Q9UIA0 394 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 SORCS3Q9UPU3 1222 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 MYRFQ9Y2G1 1151 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 CCL15-CCL14A0A0B4J2E2 113 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 SCAMP3O14828 347 aaKnown RBP12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 CCL15Q16663 113 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 ZRANB3Q5FWF4 1079 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 NXNL1Q96CM4 212 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 GAD1Q99259 594 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 HAPLN2Q9GZV7 340 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 POPDC2Q9HBU9 364 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 NENFQ9UMX5 172 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 BTRCQ9Y297 605 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 PPEF2O14830 753 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 MAP3K13O43283 966 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 KATNA1O75449 491 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 MT-CYBP00156 380 aaPredicted RBP12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 PCSK1P29120 753 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 HSPA13P48723 471 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 OAZ1P54368 228 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 PFKFB4Q16877 469 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 DCAF4L1Q3SXM0 396 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 CTU1Q7Z7A3 348 aaKnown RBP12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 CALML6Q8TD86 181 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 C17orf80Q9BSJ5 609 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 UBE2OQ9C0C9 1292 aaKnown RBP12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 CATSPERBQ9H7T0 1116 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 ABT1Q9ULW3 272 aaKnown RBP12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 RNF112Q9ULX5 631 aa12.62□□□□□ -0.39
SNRNP48-201ENST00000342415 OAS1P00973 400 aaKnown RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 NOS2P35228 1153 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 PPARGP37231 505 aaPredicted RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 GSSP48637 474 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 SLC7A2P52569 658 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 LSM12Q3MHD2 195 aaKnown RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 SFT2D3Q587I9 215 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 ANKRD13AQ8IZ07 590 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 ZNF567Q8N184 647 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 FAM47BQ8NA70 645 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 ANKRD52Q8NB46 1076 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 EZH1Q92800 747 aaPredicted RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 RUBCNLQ9H714 662 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 CITO14578 2027 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 FESP07332 822 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 HSPA1AP0DMV8 641 aaKnown RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 HSPA1BP0DMV9 641 aaKnown RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 TSHRP16473 764 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 ITGB6P18564 788 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 RPS12P25398 132 aaKnown RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 ADORA2AP29274 412 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 SLC26A2P50443 739 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 GEMP55040 296 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 EFEMP1Q12805 493 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 GNASQ5JWF2 1037 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 DENND6AQ8IWF6 608 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 RNF217Q8TC41 542 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 TRPM4Q8TD43 1214 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 GPR20Q99678 358 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 SEMA4BQ9NPR2 832 aaPredicted RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 SLCO1B7G3V0H7 640 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 KDM1AO60341 852 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 PNPLA4P41247 253 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 PSEN1P49768 467 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 MPP1Q00013 466 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 TMEM63BQ5T3F8 832 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 RPS27LQ71UM5 84 aaKnown RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 STK32CQ86UX6 486 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 C2orf69Q8N8R5 385 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 SEPT5Q99719 369 aaPredicted RBP12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 ARHGEF4Q9NR80 690 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 PSMD13Q9UNM6 376 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 RAP2CQ9Y3L5 183 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 COMMD3-BMI1R4GMX3 469 aa12.61□□□□□ -0.39
SNRNP48-201ENST00000342415 TMEM233B4DJY2 109 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 TMCC1O94876 653 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 PTPN1P18031 435 aaKnown RBP12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 FASP25445 335 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 MATKP42679 507 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 CXCR3P49682 368 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 USP46P62068 366 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 POU4F1Q01851 419 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 CLEC6AQ6EIG7 209 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 B3GALNT2Q8NCR0 500 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 ACMSDQ8TDX5 336 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.6□□□□□ -0.393e-8■■■■■ 70.6
SNRNP48-201ENST00000342415 ZFP42Q96MM3 310 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 STRA6Q9BX79 667 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 SSU72Q9NP77 194 aaKnown RBP12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 PAIP2BQ9ULR5 123 aaKnown RBP12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 BCLAF3A2AJT9 711 aaKnown RBP12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 AGRPO00253 132 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 FGFR1P11362 822 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 XRCC1P18887 633 aaPredicted RBP12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 SOWAHAQ2M3V2 549 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 C10orf120Q5SQS8 335 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 LRRC8BQ6P9F7 803 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 AAGABQ6PD74 315 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 DDHD1Q8NEL9 900 aa12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 DGCR14Q96DF8 476 aaKnown RBP12.6□□□□□ -0.39
SNRNP48-201ENST00000342415 RGS18Q9NS28 235 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms