RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 LTN1O94822 1766 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 CLUHO75153 1309 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 NRCAMQ92823 1304 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 DDX3YO15523 660 aaKnown RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 KRT36O76013 467 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 DDNO94850 711 aaPredicted RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 HSMCR30P0CW71 290 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PPP2R1BP30154 601 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 DDR2Q16832 855 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ITIH5Q86UX2 942 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 C18orf25Q96B23 403 aaPredicted RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 FGFBP2Q9BYJ0 223 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 STARD7Q9NQZ5 370 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 CACNA2D2Q9NY47 1150 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 MARCH2Q9P0N8 246 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 C6orf203Q9P0P8 240 aaPredicted RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 BTBD7Q9P203 1132 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ANAPC2Q9UJX6 822 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PADI4Q9UM07 663 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 TRPV2Q9Y5S1 764 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 AKAP12Q02952 1782 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 C1orf232A0A0U1RR37 186 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 RGS14O43566 566 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 BANF1O75531 89 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 PIAS1O75925 651 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ERBB2P04626 1255 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 GSTM1P09488 218 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ERCC2P18074 760 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 S100A3P33764 101 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 EPS8Q12929 822 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 TRIP4Q15650 581 aaPredicted RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 C11orf74Q86VG3 221 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 FBXW8Q8N3Y1 598 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 NKAPQ8N5F7 415 aaKnown RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 RNPEPQ9H4A4 650 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 ALG9Q9H6U8 611 aa10.91□□□□□ -0.66
CD44-201ENST00000263398 KRCC1Q9NPI7 259 aaPredicted RBP10.91□□□□□ -0.66
CD44-201ENST00000263398 MYPNQ86TC9 1320 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 FAM220BPB1ANY3 271 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 ANXA6P08133 673 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 SNRPB2P08579 225 aaKnown RBP10.9□□□□□ -0.66
CD44-201ENST00000263398 VCLP18206 1134 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 FMO4P31512 558 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 STARD3Q14849 445 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 PFKFB4Q16877 469 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 ZC3H12AQ5D1E8 599 aaKnown RBP10.9□□□□□ -0.66
CD44-201ENST00000263398 RP9Q8TA86 221 aaKnown RBP10.9□□□□□ -0.66
CD44-201ENST00000263398 MIEF2Q96C03 454 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 MBOAT7Q96N66 472 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 YIPF2Q9BWQ6 316 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 LRRC4CQ9HCJ2 640 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 CATSPERZQ9NTU4 200 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 OPTCQ9UBM4 332 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 FAM50BQ9Y247 325 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 TRIM24O15164 1050 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 HS6ST1O60243 411 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 RECQL5O94762 991 aaPredicted RBP10.9□□□□□ -0.66
CD44-201ENST00000263398 ALDH1A2O94788 518 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 PIK3R1P27986 724 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 GABRB2P47870 512 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 GRIA4P48058 902 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 TUFMP49411 452 aaKnown RBP10.9□□□□□ -0.66
CD44-201ENST00000263398 GSTA3Q16772 222 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 EEF1DP3Q658K8 133 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 DHDDSQ86SQ9 333 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 LUZP2Q86TE4 346 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 SYTL1Q8IYJ3 562 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 TMEM132CQ8N3T6 1108 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 LRRC52Q8N7C0 313 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 TRPC4APQ8TEL6 797 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 TTYH3Q9C0H2 523 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 LHX5Q9H2C1 402 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 NUDT5Q9UKK9 219 aa10.9□□□□□ -0.66
CD44-201ENST00000263398 A0A1W2PPM1 405 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 FAM20BO75063 409 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 STAU1O95793 577 aaKnown RBP10.9□□□□□ -0.67
CD44-201ENST00000263398 OR56A5P0C7T3 313 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 CCNB1P14635 433 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 PBLDP30039 288 aaPredicted RBP10.9□□□□□ -0.67
CD44-201ENST00000263398 MATKP42679 507 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 RXRGP48443 463 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 CHN2P52757 468 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 PSME3P61289 254 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 UGCGQ16739 394 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 SWT1Q5T5J6 900 aaKnown RBP10.9□□□□□ -0.67
CD44-201ENST00000263398 FAM228AQ86W67 206 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 TRIM48Q8IWZ4 208 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 SEMA6AQ9H2E6 1030 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 SMPD4Q9NXE4 827 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 STMN3Q9NZ72 180 aa10.9□□□□□ -0.67
CD44-201ENST00000263398 ATXN2Q99700 1313 aaKnown RBP10.9□□□□□ -0.67
CD44-201ENST00000263398 CD3EAPO15446 510 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 GOT1P17174 413 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 HK2P52789 917 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 BOP1Q14137 746 aaKnown RBP10.89□□□□□ -0.67
CD44-201ENST00000263398 NRF1Q16656 503 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 SLC39A12Q504Y0 691 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 ARMC12Q5T9G4 340 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 TTC27Q6P3X3 843 aa10.89□□□□□ -0.67
CD44-201ENST00000263398 IL27RAQ6UWB1 636 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms