RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 GPATCH2Q9NW75 528 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SNX6Q9UNH7 406 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 DUSP12Q9UNI6 340 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 CFL2Q9Y281 166 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ERGIC3Q9Y282 383 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 B3GNT3Q9Y2A9 372 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 MED16Q9Y2X0 877 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SRPRBQ9Y5M8 271 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 MAP3K19Q56UN5 1328 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 CBY3A6NI87 242 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 KRBOX1C9JBD0 128 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 I3L521 148 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 GADD45BO75293 160 aaPredicted RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 GCNT3O95395 438 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 EYA4O95677 639 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PNPP00491 289 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 CYP2D6P10635 497 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ETFAP13804 333 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PRKAR2AP13861 404 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 CBX5P45973 191 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SLCO1A2P46721 670 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SOX10P56693 466 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 USP46P62068 366 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 HPCAP84074 193 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ROR1Q01973 937 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 BTKQ06187 659 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NIPAL4Q0D2K0 466 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 GNA13Q14344 377 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SHROOM1Q2M3G4 852 aaPredicted RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 CDNFQ49AH0 187 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 FIGNQ5HY92 759 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NOMO2Q5JPE7 1267 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ATAD3CQ5T2N8 411 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 HACD4Q5VWC8 232 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 RNF219Q5W0B1 726 aaPredicted RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 PAPD7Q5XG87 772 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 DPP8Q6V1X1 898 aaPredicted RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 ZNF662Q6ZS27 426 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 C19orf35Q6ZS72 473 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TRAPPC11Q7Z392 1133 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 LINC00523Q86TU6 105 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NLRX1Q86UT6 975 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 LRRC34Q8IZ02 419 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PARP8Q8N3A8 854 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 LIX1Q8N485 282 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 METTL25Q8N6Q8 603 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 OR7G2Q8NG99 324 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 DNAJB8Q8NHS0 232 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ACTRT1Q8TDG2 376 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ING5Q8WYH8 240 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TATDN2Q93075 761 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TAAR8Q969N4 342 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 C9orf72Q96LT7 481 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ZSWIM3Q96MP5 696 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NLRP3Q96P20 1036 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SLC29A1Q99808 456 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PKIBQ9C010 78 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 DDX47Q9H0S4 455 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 SPINK5Q9NQ38 1064 aaPredicted RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 MKS1Q9NXB0 559 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 COPZ2Q9P299 210 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NUFIP1Q9UHK0 495 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 PCDHA7Q9UN72 937 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PSMD13Q9UNM6 376 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 RTCBQ9Y3I0 505 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 TRAF6Q9Y4K3 522 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 IVNS1ABPQ9Y6Y0 642 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 A0A0D9SFI3 127 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 DENND3A2RUS2 1198 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TTLL13PA6NNM8 815 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TRIM38O00635 465 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PDCD5O14737 125 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 VILLO15195 856 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 OIP5O43482 229 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NR1I2O75469 434 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 METTL18O95568 372 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ABHD2P08910 425 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 POU2F1P14859 743 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ZNF24P17028 368 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 CTPS1P17812 591 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NUDT1P36639 197 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ACADSBP45954 432 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 OR2B6P58173 313 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 CDK18Q07002 472 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SLC3A1Q07837 685 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ELP6Q0PNE2 266 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PNOCQ13519 176 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TFDP1Q14186 410 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 RASA2Q15283 850 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PYDC2Q56P42 97 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 MEI1Q5TIA1 1274 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ARHGAP36Q6ZRI8 547 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TPGS1Q6ZTW0 290 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ARMCX2Q7L311 632 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 NECAB2Q7Z6G3 386 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TBC1D21Q8IYX1 336 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 FBXW8Q8N3Y1 598 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SVOPLQ8N434 492 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 MRPL50Q8N5N7 158 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 FAM46DQ8NEK8 389 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms