RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CALN1Q9BXU9 219 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 ABCB8Q9NUT2 735 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 TMEM248Q9NWD8 314 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 CWC15Q9P013 229 aaKnown RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 KIAA1522Q9P206 1035 aaPredicted RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 FBXO10Q9UK96 956 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 CLEC4EQ9ULY5 219 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 NDRG2Q9UN36 371 aaKnown RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 NEU3Q9UQ49 428 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 MRPS17Q9Y2R5 130 aaKnown RBP10.3□□□□□ -0.76
NUP54-203ENST00000504173 LAMA1P25391 3075 aa10.3□□□□□ -0.76
NUP54-203ENST00000504173 RALGAPA1Q6GYQ0 2036 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 KIAA1549LQ6ZVL6 1849 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CCDC66A2RUB6 948 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 USP27XA6NNY8 438 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 MIF4GDA9UHW6 222 aaKnown RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 KIF5CO60282 957 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 KAT7O95251 611 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CAPNS1P04632 268 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CD48P09326 243 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CISD3P0C7P0 127 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 PABPC1P11940 636 aaKnown RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 DRD1P21728 446 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 KDELR1P24390 212 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CTNNA2P26232 953 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 TARSP26639 723 aaKnown RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 HLA-FP30511 346 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 OR1E1P30953 314 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CD70P32970 193 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CTNNA1P35221 906 aaKnown RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 GRIA2P42262 883 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 MARCKSL1P49006 195 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 HCAR3P49019 387 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 MAPKAPK2P49137 400 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 ARSEP51690 589 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 OXCT1P55809 520 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 LMAN2Q12907 356 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 MMRN1Q13201 1228 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 DPYSL3Q14195 570 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 SF3A2Q15428 464 aaKnown RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 FSCBQ5H9T9 825 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 TMEM196Q5HYL7 178 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 C6orf118Q5T5N4 469 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CXorf57Q6NSI4 855 aaKnown RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 NUDT18Q6ZVK8 323 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 NLRP14Q86W24 1093 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 KATNAL2Q8IYT4 538 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 UBL4BQ8N7F7 174 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 TERB1Q8NA31 727 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 C12orf50Q8NA57 414 aaPredicted RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 FIBINQ8TAL6 211 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 FAM71BQ8TC56 605 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 WFIKKN2Q8TEU8 576 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 TSC1Q92574 1164 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 KRT35Q92764 455 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CSPG4P5Q96PW8 444 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 ZNF670Q9BS34 389 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 CHRDQ9H2X0 955 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 RETREG1Q9H6L5 497 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 DONSONQ9NYP3 566 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 RCOR3Q9P2K3 495 aaPredicted RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 DNAI1Q9UI46 699 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 GGA2Q9UJY4 613 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 PACSIN2Q9UNF0 486 aaPredicted RBP10.29□□□□□ -0.76
NUP54-203ENST00000504173 SLC27A6Q9Y2P4 619 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 PCDHA3Q9Y5H8 950 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 F5P12259 2224 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 ZNF462Q96JM2 2506 aa10.29□□□□□ -0.76
NUP54-203ENST00000504173 DOCK4Q8N1I0 1966 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 TBC1D3BA6NDS4 549 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 SHISA7A6NL88 538 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 WASH4PA8MWX3 477 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 HRO43593 1189 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 ZRANB2O95218 330 aaKnown RBP eCLIP10.28□□□□□ -0.76
NUP54-203ENST00000504173 TOP3BO95985 862 aaKnown RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 EGFP01133 1207 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 ERCC2P18074 760 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 AMPD1P23109 780 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 MSNP26038 577 aaKnown RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 CSKP41240 450 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 DNA2P51530 1060 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 C19orf57Q0VDD7 668 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 MESP2Q0VG99 397 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 DPYSQ14117 519 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 GEN1Q17RS7 908 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 HS1BP3Q53T59 392 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 ANKRD20A8PQ5CZ79 823 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 ZNF569Q5MCW4 686 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 RNF219Q5W0B1 726 aaPredicted RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 FSTL4Q6MZW2 842 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 SETD3Q86TU7 594 aaPredicted RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 CCDC50Q8IVM0 306 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 RCOR2Q8IZ40 523 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 AHI1Q8N157 1196 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 PHTF2Q8N3S3 785 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.28□□□□□ -0.76
NUP54-203ENST00000504173 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 UBE2Q2Q8WVN8 375 aa10.28□□□□□ -0.76
NUP54-203ENST00000504173 RNF25Q96BH1 459 aaPredicted RBP10.28□□□□□ -0.76
NUP54-203ENST00000504173 RBM41Q96IZ5 413 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms