RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 C6P13671 934 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 VAV1P15498 845 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 HNRNPA2B1P22626 353 aaKnown RBP12.96□□□□□ -0.33
SKA3-206ENST00000475251 AKT2P31751 481 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 NDUFA8P51970 172 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 VAC14Q08AM6 782 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 CNTN1Q12860 1018 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 LRMPQ12912 555 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 PDAP1Q13442 181 aaKnown RBP12.96□□□□□ -0.33
SKA3-206ENST00000475251 IGF2-ASQ6U949 168 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 TMC6Q7Z403 805 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 TAC4Q86UU9 113 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 CCAR2Q8N163 923 aaKnown RBP12.96□□□□□ -0.33
SKA3-206ENST00000475251 FAM181AQ8N9Y4 354 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 TMEM145Q8NBT3 493 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 SNRNP27Q8WVK2 155 aaKnown RBP12.96□□□□□ -0.33
SKA3-206ENST00000475251 CLMPQ9H6B4 373 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 POPDC2Q9HBU9 364 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 METTL14Q9HCE5 456 aaKnown RBP12.96□□□□□ -0.33
SKA3-206ENST00000475251 CPNE5Q9HCH3 593 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 PPM1HQ9ULR3 514 aa12.96□□□□□ -0.33
SKA3-206ENST00000475251 KCNU1A8MYU2 1149 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 PIAS2O75928 621 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 BRD2P25440 801 aaKnown RBP12.95□□□□□ -0.34
SKA3-206ENST00000475251 RBMS1P29558 406 aaKnown RBP12.95□□□□□ -0.34
SKA3-206ENST00000475251 RPL34P49207 117 aaKnown RBP12.95□□□□□ -0.34
SKA3-206ENST00000475251 METAP1P53582 386 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 HNRNPKP61978 463 aaKnown RBP eCLIP12.95□□□□□ -0.34
SKA3-206ENST00000475251 KRT85P78386 507 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 KCNC4Q03721 635 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 POM121L1PQ3SYA9 428 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 ZC3H12AQ5D1E8 599 aaKnown RBP12.95□□□□□ -0.34
SKA3-206ENST00000475251 DCP2Q8IU60 420 aaKnown RBP12.95□□□□□ -0.34
SKA3-206ENST00000475251 HSCBQ8IWL3 235 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 PPM1KQ8N3J5 372 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 SNX21Q969T3 373 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 SLC35C1Q96A29 364 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 APOLD1Q96LR9 279 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 MED15Q96RN5 788 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 SRRTQ9BXP5 876 aaKnown RBP12.95□□□□□ -0.34
SKA3-206ENST00000475251 CALN1Q9BXU9 219 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 DYRK4Q9NR20 520 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 XPO7Q9UIA9 1087 aaKnown RBP12.95□□□□□ -0.34
SKA3-206ENST00000475251 SARDHQ9UL12 918 aa12.95□□□□□ -0.34
SKA3-206ENST00000475251 ARID1BQ8NFD5 2236 aaPredicted RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 ZNF462Q96JM2 2506 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 A0A1W2PQU0 124 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 H3BM21 787 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 PMM2O15305 246 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 SLC31A1O15431 190 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 LZTS3O60299 673 aaPredicted RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 TRUB2O95900 331 aaKnown RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 CCR1P32246 355 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 FMO5P49326 533 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 YWHAZP63104 245 aaKnown RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 LRRC63Q05C16 580 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 ZNF177Q13360 481 aaPredicted RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 DLG2Q15700 870 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 MEA1Q16626 185 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 SYPL2Q5VXT5 272 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 Q6ZVU0 165 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 HORMAD1Q86X24 394 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 SMYD4Q8IYR2 804 aaPredicted RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 MAPK15Q8TD08 544 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 STK32AQ8WU08 396 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 MED8Q96G25 268 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 RPRD1AQ96P16 312 aaPredicted RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 GTPBP4Q9BZE4 634 aaKnown RBP12.94□□□□□ -0.34
SKA3-206ENST00000475251 ASCL3Q9NQ33 180 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 UCKL1Q9NWZ5 548 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 VPS28Q9UK41 221 aa12.94□□□□□ -0.34
SKA3-206ENST00000475251 A0A1W2PQ27 194 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 A0A1W2PQ64 194 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 A6NNZ2 444 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 SCAMP1O15126 338 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 MED7O43513 233 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 IGLV3-25P01717 112 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 MLLT3P42568 568 aaPredicted RBP12.93□□□□□ -0.34
SKA3-206ENST00000475251 GPD2P43304 727 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 KRT83P78385 493 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 GCNT1Q02742 428 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 ISXQ2M1V0 245 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 COBLL1Q53SF7 1204 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 PIP5KL1Q5T9C9 394 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 CXorf57Q6NSI4 855 aaKnown RBP12.93□□□□□ -0.34
SKA3-206ENST00000475251 ZCCHC8Q6NZY4 707 aaKnown RBP12.93□□□□□ -0.34
SKA3-206ENST00000475251 SH2D3CQ8N5H7 860 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 TMIEQ8NEW7 156 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 TPCN2Q8NHX9 752 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 IFI44Q8TCB0 444 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 TTC9Q92623 222 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 PPP1R16AQ96I34 528 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 VCPIP1Q96JH7 1222 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 MYOCQ99972 504 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 ZSWIM1Q9BR11 485 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 FEM1AQ9BSK4 669 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 THAP9Q9H5L6 903 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 FAM204AQ9H8W3 233 aa12.93□□□□□ -0.34
SKA3-206ENST00000475251 CA5BQ9Y2D0 317 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms