RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TMEM74BQ9NUR3 256 aa15.54■□□□□ 0.08
TRIM28-205ENST00000595028 EVLQ9UI08 416 aaPredicted RBP15.54■□□□□ 0.08
TRIM28-205ENST00000595028 PILRBQ9UKJ0 227 aa15.54■□□□□ 0.08
TRIM28-205ENST00000595028 TBC1D30Q9Y2I9 924 aa15.54■□□□□ 0.08
TRIM28-205ENST00000595028 IGLV3-10A0A075B6K4 115 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 EDDM13A0A1B0GTR0 161 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 TCRBV5S1A1TA0A578 114 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 SRRM3A6NNA2 597 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 TTC34A8MYJ7 566 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 E9PAM4 449 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 GOLGA6L19H0YKK7 550 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 KHNYNO15037 678 aaKnown RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 GPD1P21695 349 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 RFC1P35251 1148 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 PRKCIP41743 596 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 NUMBP49757 651 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 STK19P49842 368 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 TTC31Q49AM3 519 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 RAB6CQ53S08 254 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 TRIM61Q5EBN2 209 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 FIGNQ5HY92 759 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 DNAJC24Q6P3W2 148 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 LRRC31Q6UY01 552 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 STRADAQ7RTN6 431 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 FOXJ1Q92949 421 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 ALG14Q96F25 216 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 ZNF419Q96HQ0 510 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 PPP1R9BQ96SB3 815 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 FEM1AQ9BSK4 669 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 GPR174Q9BXC1 333 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 TMEM121BQ9BXQ6 578 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 RAB6CQ9H0N0 254 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 RSPH9Q9H1X1 276 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-205ENST00000595028 SLCO3A1Q9UIG8 710 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 VPS28Q9UK41 221 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 OR51B4Q9Y5P0 310 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 CHD5Q8TDI0 1954 aa15.53■□□□□ 0.08
TRIM28-205ENST00000595028 TARSL2A2RTX5 802 aaKnown RBP15.52■□□□□ 0.08
TRIM28-205ENST00000595028 SIGLEC16A6NMB1 481 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 DRGXA6NNA5 263 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 DNTTP04053 509 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 RHOCP08134 193 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 PBX1P40424 430 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 HDAC4P56524 1084 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 ARTNQ5T4W7 220 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 SH3PXD2AQ5TCZ1 1133 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 SFMBT2Q5VUG0 894 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 ACAD10Q6JQN1 1059 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 PPP1R2P3Q6NXS1 205 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 FAM124AQ86V42 546 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 MCOLN2Q8IZK6 566 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 FAM172AQ8WUF8 416 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 CENPIQ92674 756 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-205ENST00000595028 RPL10LQ96L21 214 aaKnown RBP15.52■□□□□ 0.08
TRIM28-205ENST00000595028 NUP58Q9BVL2 599 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 EDEM3Q9BZQ6 932 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 TAS2R14Q9NYV8 317 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 AIPL1Q9NZN9 384 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 MPP6Q9NZW5 540 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 ZNF212Q9UDV6 495 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 SLC25A13Q9UJS0 675 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 LHX6Q9UPM6 363 aa15.52■□□□□ 0.08
TRIM28-205ENST00000595028 ADAMTS9Q9P2N4 1935 aa15.52■□□□□ 0.07
TRIM28-205ENST00000595028 ASCC3Q8N3C0 2202 aaKnown RBP15.51■□□□□ 0.07
TRIM28-205ENST00000595028 TMEM8BA6NDV4 472 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 MEI4A8MW99 385 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 SPINK2P20155 84 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 TNFAIP3P21580 790 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 RRM1P23921 792 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 NNMTP40261 264 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 VASPP50552 380 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-205ENST00000595028 NRG1Q02297 640 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-205ENST00000595028 FOXC1Q12948 553 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 ARL13BQ3SXY8 428 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 WDR45BQ5MNZ6 344 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 PPP1R15BQ5SWA1 713 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 C6orf118Q5T5N4 469 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 C9orf64Q5T6V5 341 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 SLC23A3Q6PIS1 610 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 WDR59Q6PJI9 974 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 RABEPKQ7Z6M1 372 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 TFAP2DQ7Z6R9 452 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 SETD3Q86TU7 594 aaPredicted RBP15.51■□□□□ 0.07
TRIM28-205ENST00000595028 CCDC185Q8N715 623 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 CADM4Q8NFZ8 388 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 NTAN1Q96AB6 310 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 MCEEQ96PE7 176 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 ZYG11BQ9C0D3 744 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 MUC3BQ9H195 1237 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 PCED1AQ9H1Q7 454 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 PABPC3Q9H361 631 aaKnown RBP15.51■□□□□ 0.07
TRIM28-205ENST00000595028 HAUS4Q9H6D7 363 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 SCML1Q9UN30 329 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 WASF3Q9UPY6 502 aa15.51■□□□□ 0.07
TRIM28-205ENST00000595028 FREM2Q5SZK8 3169 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 A0A1W2PQJ5 194 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 ANKRD62A6NC57 917 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 CCP110O43303 1012 aa15.5■□□□□ 0.07
TRIM28-205ENST00000595028 RNASEH1O60930 286 aaKnown RBP15.5■□□□□ 0.07
TRIM28-205ENST00000595028 SRGAP2O75044 1071 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms