RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 GDAP1L1Q96MZ0 367 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 RBM15Q96T37 977 aaKnown RBP eCLIP6.34□□□□□ -1.39
LIG3-206ENST00000586058 PBX4Q9BYU1 374 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 PRKD2Q9BZL6 878 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 MUC3BQ9H195 1237 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 MAGEH1Q9H213 219 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 PPCSQ9HAB8 311 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 XAB2Q9HCS7 855 aaKnown RBP6.34□□□□□ -1.39
LIG3-206ENST00000586058 ZNF334Q9HCZ1 680 aaPredicted RBP6.34□□□□□ -1.39
LIG3-206ENST00000586058 EIF2B3Q9NR50 452 aaKnown RBP6.34□□□□□ -1.39
LIG3-206ENST00000586058 SMPD4Q9NXE4 827 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 GRHL1Q9NZI5 618 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 MPP6Q9NZW5 540 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 TBC1D14Q9P2M4 693 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 AAR2Q9Y312 384 aaKnown RBP6.34□□□□□ -1.39
LIG3-206ENST00000586058 NEU2Q9Y3R4 380 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 HCFC2Q9Y5Z7 792 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 IKBKGQ9Y6K9 419 aa6.34□□□□□ -1.39
LIG3-206ENST00000586058 ZNF106Q9H2Y7 1883 aaKnown RBP6.34□□□□□ -1.39
LIG3-206ENST00000586058 DOCK6Q96HP0 2047 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 NOTCH4Q99466 2003 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 TICRRQ7Z2Z1 1910 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 IGLV3-10A0A075B6K4 115 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 A0A087WUV0 522 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 CCDC195A0A1B0GUA6 201 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 GRXCR1A8MXD5 290 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 RASA4BC9J798 803 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 GOLGA8KD6RF30 607 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 FAM72CH0Y354 149 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 RASA4O43374 803 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 LUC7L3O95232 432 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 OLFM2O95897 454 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CPP00450 1065 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 F11P03951 625 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CCNB1P14635 433 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 EPCAMP16422 314 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 RPL22P35268 128 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 NRIP1P48552 1158 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 KCNQ1P51787 676 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 GEMP55040 296 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 SLC7A9P82251 487 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 IL10RBQ08334 325 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 ITKQ08881 620 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 PDIA2Q13087 525 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 EIF4EBP2Q13542 120 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 PARP6Q2NL67 630 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 MPPE1Q53F39 396 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 RNASEH2BQ5TBB1 312 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 FAM72AQ5TYM5 149 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 MARC1Q5VT66 337 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 TXNDC8Q6A555 127 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 FAM72DQ6L9T8 149 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CES5AQ6NT32 575 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 FBXL22Q6P050 247 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 LRIG3Q6UXM1 1119 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 ZNF783Q6ZMS7 281 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 TAOK1Q7L7X3 1001 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 SETD3Q86TU7 594 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 METTL3Q86U44 580 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 FAM72BQ86X60 149 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 TMC8Q8IU68 726 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 MFN1Q8IWA4 741 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 PALM2Q8IXS6 379 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 ZBED8Q8IZ13 594 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 UMODL1-AS1Q8N2C9 162 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CARNMT1Q8N4J0 409 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 TAB3Q8N5C8 712 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 DNAAF3Q8N9W5 541 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CCDC110Q8TBZ0 833 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 DDI1Q8WTU0 396 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 PYROXD1Q8WU10 500 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 PRCCQ92733 491 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 OTUB2Q96DC9 234 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 LRRC39Q96DD0 335 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 MRPL38Q96DV4 380 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 LGMNQ99538 433 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 NAT9Q9BTE0 207 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CINPQ9BW66 212 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 KLF16Q9BXK1 252 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 FUT8Q9BYC5 575 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 GBA3Q9H227 469 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 PABPC3Q9H361 631 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 CDC42EP4Q9H3Q1 356 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 CENPHQ9H3R5 247 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 NSUN3Q9H649 340 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 TASP1Q9H6P5 420 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 LRRC40Q9H9A6 602 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 VPS37BQ9H9H4 285 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CERS4Q9HA82 394 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 ATP13A1Q9HD20 1204 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 SAYSD1Q9NPB0 183 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 ZDHHC18Q9NUE0 388 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 CFAP97Q9P2B7 532 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 ARHGAP26Q9UNA1 814 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 PLAAQ9Y263 795 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 YBX2Q9Y2T7 364 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 MRPS23Q9Y3D9 190 aaKnown RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 SNX10Q9Y5X0 201 aa6.33□□□□□ -1.4
LIG3-206ENST00000586058 ZFP37Q9Y6Q3 630 aaPredicted RBP6.33□□□□□ -1.4
LIG3-206ENST00000586058 EXOC1LA0A1B0GW35 172 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms