RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 PBXIP1Q96AQ6 731 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 R3HDMLQ9H3Y0 253 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 UGT1A7Q9HAW7 530 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 UGT1A10Q9HAW8 530 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 UGT1A8Q9HAW9 530 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 KANSL3Q9P2N6 904 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 KNL1Q8NG31 2342 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 METTL18O95568 372 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 ALDH1A1P00352 501 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 URODP06132 367 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 APOA4P06727 396 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 SLC25A3Q00325 362 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 ITGA7Q13683 1181 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 KPNB1Q14974 876 aaKnown RBP15.28■□□□□ 0.04
CUX1-214ENST00000550008 UNC5BQ8IZJ1 945 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 TOP6BLQ8N6T0 577 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 MRPS31Q92665 395 aaKnown RBP15.28■□□□□ 0.04
CUX1-214ENST00000550008 TM6SF2Q9BZW4 377 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 CHRAC1Q9NRG0 131 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 STARD13Q9Y3M8 1113 aa15.28■□□□□ 0.04
CUX1-214ENST00000550008 ESRRBO95718 433 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 GRK4P32298 578 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 PBX3P40426 434 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 NPY2RP49146 381 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 TARBP2Q15633 366 aaKnown RBP15.27■□□□□ 0.04
CUX1-214ENST00000550008 OLFML2BQ68BL8 750 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 FITM2Q8N6M3 262 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 SCAMP5Q8TAC9 235 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 AZIN2Q96A70 460 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 HERPUD2Q9BSE4 406 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 ING2Q9H160 280 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 TRMT13Q9NUP7 481 aaKnown RBP15.27■□□□□ 0.04
CUX1-214ENST00000550008 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.27■□□□□ 0.04
CUX1-214ENST00000550008 FARP1Q9Y4F1 1045 aaPredicted RBP15.27■□□□□ 0.04
CUX1-214ENST00000550008 COL1A2P08123 1366 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 A8MUI8 341 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 PAGE1O75459 146 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 DAB1O75553 588 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 UNC5CO95185 931 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 HIST1H2AGP0C0S8 130 aaPredicted RBP15.27■□□□□ 0.04
CUX1-214ENST00000550008 MYL4P12829 197 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 HIST1H2ADP20671 130 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 ARHGEF7Q14155 803 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 CRYMQ14894 314 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 STRADAQ7RTN6 431 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 HIST1H2AHQ96KK5 128 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 HIST1H2AJQ99878 128 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 H2AFJQ9BTM1 129 aa15.27■□□□□ 0.04
CUX1-214ENST00000550008 H7C4K7 107 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 SOAT2O75908 522 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 LRIG2O94898 1065 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 GUCA1CO95843 209 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 VHLP40337 213 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 TUSC3Q13454 348 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 ECHDC2Q86YB7 292 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 PIWIL2Q8TC59 973 aaKnown RBP15.27■□□□□ 0.03
CUX1-214ENST00000550008 SEMA3CQ99985 751 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 BTBD10Q9BSF8 475 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 DCLRE1BQ9H816 532 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 TBC1D13Q9NVG8 400 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 PCDHA11Q9Y5I1 949 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 LGR5O75473 907 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 ATP6V1B1P15313 513 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 PKNOX1P55347 436 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 DUSP4Q13115 394 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 UBAP2LQ14157 1087 aaKnown RBP15.27■□□□□ 0.03
CUX1-214ENST00000550008 BTG3Q14201 252 aaPredicted RBP15.27■□□□□ 0.03
CUX1-214ENST00000550008 B3GNT9Q6UX72 402 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 C16orf89Q6UX73 402 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 PACS1Q6VY07 963 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 TPGS1Q6ZTW0 290 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 SNX32Q86XE0 403 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 MCRS1Q96EZ8 462 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 DTLQ9NZJ0 730 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 PLA2G4CQ9UP65 541 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 EFR3BQ9Y2G0 817 aa15.27■□□□□ 0.03
CUX1-214ENST00000550008 MAGEB16A2A368 324 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 ARL5CA6NH57 179 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 MT-CYBP00156 380 aaPredicted RBP15.26■□□□□ 0.03
CUX1-214ENST00000550008 SATB1Q01826 763 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 CHADLQ6NUI6 762 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 SLC35B2Q8TB61 432 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 SLC44A1Q8WWI5 657 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 PPP1R2P1Q96PQ5 205 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 CCDC90BQ9GZT6 254 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 IL22Q9GZX6 179 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 CCDC167Q9P0B6 97 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 FAF1Q9UNN5 650 aaPredicted RBP15.26■□□□□ 0.03
CUX1-214ENST00000550008 ATP6AP2A0A1C7CYW4 349 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 PRR23AA6NEV1 266 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 ATP6AP2O75787 350 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 TBL3Q12788 808 aaKnown RBP15.26■□□□□ 0.03
CUX1-214ENST00000550008 HFE2Q6ZVN8 426 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 MFN1Q8IWA4 741 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 LZTR1Q8N653 840 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 RNF217Q8TC41 542 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 B3GALT6Q96L58 329 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 NR5A2O00482 541 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 ATG7O95352 703 aa15.26■□□□□ 0.03
CUX1-214ENST00000550008 SNAI1O95863 264 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms