RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MBL2P11226 248 aaPredicted RBP21.72■■□□□ 1.07
VPS28-212ENST00000530836 VAV1P15498 845 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 GJA1P17302 382 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 CEBPBP17676 345 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 TACR2P21452 398 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 CCNCP24863 283 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 FDFT1P37268 417 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 BASP1P80723 227 aaKnown RBP21.72■■□□□ 1.07
VPS28-212ENST00000530836 ZP2Q05996 745 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 AFMIDQ63HM1 303 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 RAP1GAP2Q684P5 730 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 IQCKQ8N0W5 287 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 UBLCP1Q8WVY7 318 aaPredicted RBP21.72■■□□□ 1.07
VPS28-212ENST00000530836 PRCCQ92733 491 aaPredicted RBP21.72■■□□□ 1.07
VPS28-212ENST00000530836 RAB6BQ9NRW1 208 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 FAM53CQ9NYF3 392 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 TRHDEQ9UKU6 1024 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 ZFP37Q9Y6Q3 630 aaPredicted RBP21.72■■□□□ 1.07
VPS28-212ENST00000530836 C2orf16Q68DN1 1984 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 LOC730098B7Z3J9 87 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 HDCP19113 662 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 SP100P23497 879 aaPredicted RBP21.71■■□□□ 1.07
VPS28-212ENST00000530836 DDX6P26196 483 aaKnown RBP eCLIP21.71■■□□□ 1.07
VPS28-212ENST00000530836 GBP2P32456 591 aaPredicted RBP21.71■■□□□ 1.07
VPS28-212ENST00000530836 MAGEA6P43360 314 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 MAPKAPK2P49137 400 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 TEAD2Q15562 447 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 RABGAP1LQ5R372 815 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 ANKRD20A2Q5SQ80 823 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 ANKRD20A1Q5TYW2 823 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 ANKRD20A3Q5VUR7 823 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 TIGD7Q6NT04 549 aaPredicted RBP21.71■■□□□ 1.07
VPS28-212ENST00000530836 LRIG3Q6UXM1 1119 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 NPAS3Q8IXF0 933 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 CCDC13Q8IYE1 715 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 CCDC110Q8TBZ0 833 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 ING5Q8WYH8 240 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 RPRD1AQ96P16 312 aaPredicted RBP21.71■■□□□ 1.07
VPS28-212ENST00000530836 TRPC7Q9HCX4 862 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 GDE1Q9NZC3 331 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 DOCK6Q96HP0 2047 aa21.71■■□□□ 1.07
VPS28-212ENST00000530836 C2CD4DB7Z1M9 353 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 RNF103O00237 685 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 EIF3HO15372 352 aaKnown RBP eCLIP21.7■■□□□ 1.06
VPS28-212ENST00000530836 CORO1AP31146 461 aaKnown RBP21.7■■□□□ 1.06
VPS28-212ENST00000530836 NADSYN1Q6IA69 706 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 CENPUQ71F23 418 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 CCDC25Q86WR0 208 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 ATPAF2Q8N5M1 289 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 TDRD5Q8NAT2 981 aaKnown RBP21.7■■□□□ 1.06
VPS28-212ENST00000530836 EXOC4Q96A65 974 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 MED4Q9NPJ6 270 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 MPP6Q9NZW5 540 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 EPS15L1Q9UBC2 864 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 STOML2Q9UJZ1 356 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 NOTCH4Q99466 2003 aa21.7■■□□□ 1.06
VPS28-212ENST00000530836 C19orf67A6NJJ6 358 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 LAMP2P13473 410 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 EIF3BP55884 814 aaKnown RBP21.69■■□□□ 1.06
VPS28-212ENST00000530836 ARL4CP56559 192 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 SLC7A9P82251 487 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 CDK16Q00536 496 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 KCNJ11Q14654 390 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 HSP90B2PQ58FF3 399 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 ADGRF1Q5T601 910 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 POTEHQ6S545 545 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 DENND1CQ8IV53 801 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 ARHGAP12Q8IWW6 846 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 PLCD3Q8N3E9 789 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 CCDC33Q8N5R6 958 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 FATE1Q969F0 183 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 RBM15Q96T37 977 aaKnown RBP eCLIP21.69■■□□□ 1.06
VPS28-212ENST00000530836 OGFRQ9NZT2 677 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 ZMYM5Q9UJ78 669 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 ZNF510Q9Y2H8 683 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 TRAV19A0A0A6YYK7 116 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 OPA1O60313 960 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 CHKAP35790 457 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 YBEYP58557 167 aaPredicted RBP21.69■■□□□ 1.06
VPS28-212ENST00000530836 WASHC5Q12768 1159 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 CBLBQ13191 982 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 UAP1Q16222 522 aaPredicted RBP21.69■■□□□ 1.06
VPS28-212ENST00000530836 HIF1AQ16665 826 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 PARP6Q2NL67 630 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 ARHGAP15Q53QZ3 475 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 FAM133BQ5BKY9 247 aaKnown RBP21.69■■□□□ 1.06
VPS28-212ENST00000530836 TTC39BQ5VTQ0 682 aaPredicted RBP21.69■■□□□ 1.06
VPS28-212ENST00000530836 DENND2CQ68D51 928 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 TXNDC8Q6A555 127 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 IGSF8Q969P0 613 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 CELF6Q96J87 481 aaKnown RBP21.69■■□□□ 1.06
VPS28-212ENST00000530836 SLC39A8Q9C0K1 460 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 GKN1Q9NS71 199 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 IGSF9Q9P2J2 1179 aa21.69■■□□□ 1.06
VPS28-212ENST00000530836 ANAPC1Q9H1A4 1944 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 ARHGAP42A6NI28 874 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 DFFAO00273 331 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 TPSB2P20231 275 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 NRLP54845 237 aa21.68■■□□□ 1.06
VPS28-212ENST00000530836 CYP4F8P98187 520 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms