RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 COPAP53621 1224 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 GNA12Q03113 381 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 BYSLQ13895 437 aaKnown RBP22.27■■□□□ 1.16
CLN3-207ENST00000395653 DAB2IPQ5VWQ8 1189 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 CEP68Q76N32 757 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 C11orf74Q86VG3 221 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 OR2T3Q8NH03 318 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 ERLEC1Q96DZ1 483 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 RPL10LQ96L21 214 aaKnown RBP22.27■■□□□ 1.16
CLN3-207ENST00000395653 PSMB7Q99436 277 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 MKRN2Q9H000 416 aaKnown RBP22.27■■□□□ 1.16
CLN3-207ENST00000395653 DHX35Q9H5Z1 703 aaKnown RBP22.27■■□□□ 1.16
CLN3-207ENST00000395653 CATSPERBQ9H7T0 1116 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 NDFIP2Q9NV92 336 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 SLCO3A1Q9UIG8 710 aa22.27■■□□□ 1.16
CLN3-207ENST00000395653 ZFHX2Q9C0A1 2572 aaPredicted RBP22.27■■□□□ 1.16
CLN3-207ENST00000395653 FGF10O15520 208 aaPredicted RBP22.26■■□□□ 1.15
CLN3-207ENST00000395653 CYLC1P35663 651 aaPredicted RBP22.26■■□□□ 1.15
CLN3-207ENST00000395653 P2RY2P41231 377 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 NUMBP49757 651 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 STK19P49842 368 aaPredicted RBP22.26■■□□□ 1.15
CLN3-207ENST00000395653 ZNF135P52742 658 aaPredicted RBP22.26■■□□□ 1.15
CLN3-207ENST00000395653 CA9Q16790 459 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 BOLA3Q53S33 107 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 METTL3Q86U44 580 aaKnown RBP22.26■■□□□ 1.15
CLN3-207ENST00000395653 TMTC1Q8IUR5 882 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 RHOT2Q8IXI1 618 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 RTL3Q8N8U3 475 aaKnown RBP22.26■■□□□ 1.15
CLN3-207ENST00000395653 SPACA7Q96KW9 195 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 PRSS16Q9NQE7 514 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 VPS51Q9UID3 782 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 RAB23Q9ULC3 237 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 USP34Q70CQ2 3546 aa22.26■■□□□ 1.15
CLN3-207ENST00000395653 TARSL2A2RTX5 802 aaKnown RBP22.25■■□□□ 1.15
CLN3-207ENST00000395653 WASH4PA8MWX3 477 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 ZNF217O75362 1048 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 PROSCO94903 275 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 IL1R2P27930 398 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 TPI1P60174 286 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 MAP7D1Q3KQU3 841 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 PRR23BQ6ZRT6 265 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 ASCL5Q7RTU5 278 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 TMPRSS6Q8IU80 811 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 OR7D4Q8NG98 312 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 KCTD15Q96SI1 283 aaPredicted RBP22.25■■□□□ 1.15
CLN3-207ENST00000395653 PRDM16Q9HAZ2 1276 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 OSGEPQ9NPF4 335 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 DONSONQ9NYP3 566 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 DNAI1Q9UI46 699 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 HS3ST2Q9Y278 367 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 PIEZO1Q92508 2521 aa22.25■■□□□ 1.15
CLN3-207ENST00000395653 EDDM13A0A1B0GTR0 161 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 TTC34A8MYJ7 566 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 EEF2KO00418 725 aaKnown RBP22.24■■□□□ 1.15
CLN3-207ENST00000395653 RAMP2O60895 175 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 MTA2O94776 668 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 TCF4P15884 667 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 MRE11P49959 708 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 SLC25A11Q02978 314 aaKnown RBP22.24■■□□□ 1.15
CLN3-207ENST00000395653 TCEAL1Q15170 157 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 DPYSL2Q16555 572 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 KIAA1324Q6UXG2 1013 aaKnown RBP22.24■■□□□ 1.15
CLN3-207ENST00000395653 SLC35G2Q8TBE7 412 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 TEKT4Q8WW24 435 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 RFFLQ8WZ73 363 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 PRCCQ92733 491 aaPredicted RBP22.24■■□□□ 1.15
CLN3-207ENST00000395653 SIPA1Q96FS4 1042 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 ZC3H10Q96K80 434 aaKnown RBP22.24■■□□□ 1.15
CLN3-207ENST00000395653 ACE2Q9BYF1 805 aaPredicted RBP22.24■■□□□ 1.15
CLN3-207ENST00000395653 SLC6A17Q9H1V8 727 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 MAGEH1Q9H213 219 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 ATP13A1Q9HD20 1204 aa22.24■■□□□ 1.15
CLN3-207ENST00000395653 CXorf51AA0A1B0GTR3 108 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 DCLK1O15075 740 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 ATP9BO43861 1147 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 GFRA3O60609 400 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 SNAP91O60641 907 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 SIN3BO75182 1162 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 MAN1A1P33908 653 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 MAGEA1P43355 309 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 KCNT1Q5JUK3 1230 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 LAIR1Q6GTX8 287 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 SH2D3CQ8N5H7 860 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 FRS2Q8WU20 508 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 SPON2Q9BUD6 331 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 MTG2Q9H4K7 406 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 LUC7LQ9NQ29 371 aaKnown RBP22.23■■□□□ 1.15
CLN3-207ENST00000395653 SOWAHDA6NJG2 315 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 RARAP10276 462 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 HCAR3P49019 387 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 CLCN6P51797 869 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 SPA17Q15506 151 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 HADHQ16836 314 aaKnown RBP22.23■■□□□ 1.15
CLN3-207ENST00000395653 SMTNL2Q2TAL5 461 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 PLK5Q496M5 336 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 PPP6R3Q5H9R7 873 aaPredicted RBP22.23■■□□□ 1.15
CLN3-207ENST00000395653 C9orf64Q5T6V5 341 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 IL31Q6EBC2 164 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 RETSATQ6NUM9 610 aa22.23■■□□□ 1.15
CLN3-207ENST00000395653 KBTBD6Q86V97 674 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms