RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SERPINB12Q96P63 405 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 WDR83Q9BRX9 315 aaKnown RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 LRRC3Q9BY71 257 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 IGSF9Q9P2J2 1179 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 ZNF212Q9UDV6 495 aa17.29■□□□□ 0.36
CLN3-252ENST00000636907 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.29■□□□□ 0.36
CLN3-252ENST00000636907 E7EVH7 732 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 F5H5T6 163 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 RB1P06400 928 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 CA3P07451 260 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 IRF1P10914 325 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 CCNCP24863 283 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 CORO1AP31146 461 aaKnown RBP17.28■□□□□ 0.36
CLN3-252ENST00000636907 SHHQ15465 462 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 PARP6Q2NL67 630 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 PABPC1LQ4VXU2 614 aaKnown RBP17.28■□□□□ 0.36
CLN3-252ENST00000636907 TXNDC8Q6A555 127 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 GAREM2Q75VX8 874 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 CAND1Q86VP6 1230 aaKnown RBP17.28■□□□□ 0.36
CLN3-252ENST00000636907 CIR1Q86X95 450 aaPredicted RBP17.28■□□□□ 0.36
CLN3-252ENST00000636907 LGI2Q8N0V4 545 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 MCUQ8NE86 351 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 ZSCAN18Q8TBC5 510 aaPredicted RBP17.28■□□□□ 0.36
CLN3-252ENST00000636907 SLC22A17Q8WUG5 538 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 TTC25Q96NG3 672 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 SLC22A12Q96S37 553 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 CYP2S1Q96SQ9 504 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 CENPHQ9H3R5 247 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 CLUHO75153 1309 aa17.28■□□□□ 0.36
CLN3-252ENST00000636907 SHROOM3Q8TF72 1996 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 NYNRINQ9P2P1 1898 aaKnown RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 CCL16O15467 120 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 ZBTB24O43167 697 aaPredicted RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 MAFKO60675 156 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 AVILO75366 819 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 ABHD2P08910 425 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 MBL2P11226 248 aaPredicted RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 CD68P34810 354 aaPredicted RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 MAGEA10P43363 369 aaPredicted RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 SLC11A2P49281 568 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 PAPOLAP51003 745 aaKnown RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 NDST2P52849 883 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 GYS2P54840 703 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 CYP4F8P98187 520 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 C5orf22Q49AR2 442 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 TEX44Q53QW1 395 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 KCTD16Q68DU8 428 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 RFWD3Q6PCD5 774 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 ZNF534Q76KX8 674 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 ELMOD1Q8N336 334 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 ARL14EPQ8N8R7 260 aaPredicted RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 FBXO36Q8NEA4 188 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 AZIN2Q96A70 460 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 ZFRQ96KR1 1074 aaKnown RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 ATP6V1G3Q96LB4 118 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 VAT1Q99536 393 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 TMEM109Q9BVC6 243 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 FRMD8Q9BZ67 464 aaPredicted RBP17.27■□□□□ 0.36
CLN3-252ENST00000636907 SMPD4Q9NXE4 827 aa17.27■□□□□ 0.36
CLN3-252ENST00000636907 GBF1Q92538 1859 aa17.27■□□□□ 0.35
CLN3-252ENST00000636907 LPXNO60711 386 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 OLFM2O95897 454 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 JCHAINP01591 159 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 LMAN1P49257 510 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 CBLBQ13191 982 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 PPM1LQ5SGD2 360 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 SH2D3CQ8N5H7 860 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 EPS8L3Q8TE67 593 aaKnown RBP17.26■□□□□ 0.35
CLN3-252ENST00000636907 USP33Q8TEY7 942 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 PYROXD1Q8WU10 500 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 TEKT5Q96M29 485 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 AGAP3Q96P47 875 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 GORASP1Q9BQQ3 440 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 DONSONQ9NYP3 566 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 TRHDEQ9UKU6 1024 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 AGO1Q9UL18 857 aaKnown RBP17.26■□□□□ 0.35
CLN3-252ENST00000636907 GOLGA6CA6NDK9 693 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 SMIM23A6NLE4 172 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 RASA4BC9J798 803 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 NRG2O14511 850 aaPredicted RBP17.26■□□□□ 0.35
CLN3-252ENST00000636907 MATN3O15232 486 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 RASA4O43374 803 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 GOLGA6DP0CG33 693 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 ELK3P41970 407 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 GRIA1P42261 906 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 CAPN12Q6ZSI9 719 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 IGDCC3Q8IVU1 814 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 CFAP52Q8N1V2 620 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 AGGF1Q8N302 714 aaeCLIP17.26■□□□□ 0.35
CLN3-252ENST00000636907 PDCD7Q8N8D1 485 aaKnown RBP17.26■□□□□ 0.35
CLN3-252ENST00000636907 MRPS31Q92665 395 aaKnown RBP17.26■□□□□ 0.35
CLN3-252ENST00000636907 HMCESQ96FZ2 354 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 GBA3Q9H227 469 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 EIF2B3Q9NR50 452 aaKnown RBP17.26■□□□□ 0.35
CLN3-252ENST00000636907 GOLGA6AQ9NYA3 693 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 RSPH14Q9UHP6 348 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 CHMP2BQ9UQN3 213 aa17.26■□□□□ 0.35
CLN3-252ENST00000636907 A0A087WUV0 522 aaPredicted RBP17.25■□□□□ 0.35
CLN3-252ENST00000636907 TLDC2A0PJX2 215 aa17.25■□□□□ 0.35
CLN3-252ENST00000636907 MYL4P12829 197 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms