RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 KDSRQ06136 332 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 LMAN2Q12907 356 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 MMRN1Q13201 1228 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 ZNF177Q13360 481 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-211ENST00000618700 PON2Q15165 354 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 TRIM67Q6ZTA4 783 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 SETD3Q86TU7 594 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-211ENST00000618700 MAP7D3Q8IWC1 876 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 ALG3Q92685 438 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 EXOC4Q96A65 974 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 ABCB8Q9NUT2 735 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 NDFIP2Q9NV92 336 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 GGA2Q9UJY4 613 aa20.26■□□□□ 0.83
UPF3A-211ENST00000618700 A0A0A0MRY4 1105 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 DCLK1O15075 740 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 KAT7O95251 611 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 PABPC1P11940 636 aaKnown RBP20.25■□□□□ 0.83
UPF3A-211ENST00000618700 ERCC2P18074 760 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 CD72P21854 359 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 OR1E1P30953 314 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 CD70P32970 193 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 GRIA2P42262 883 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 OXCT1P55809 520 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 TAZQ16635 292 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 GEN1Q17RS7 908 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 PREPLQ4J6C6 727 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-211ENST00000618700 ZFYVE27Q5T4F4 411 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 C6orf118Q5T5N4 469 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 MEI1Q5TIA1 1274 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 FSTL4Q6MZW2 842 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 MFSD7Q6UXD7 560 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 ANKS1BQ7Z6G8 1248 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 CCDC117Q8IWD4 279 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-211ENST00000618700 SFTPA1Q8IWL2 248 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 EXD1Q8NHP7 514 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 EZH1Q92800 747 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-211ENST00000618700 CALN1Q9BXU9 219 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 TBC1D17Q9HA65 648 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 LTB4R2Q9NPC1 389 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 KIAA1522Q9P206 1035 aaPredicted RBP20.25■□□□□ 0.83
UPF3A-211ENST00000618700 OR51B4Q9Y5P0 310 aa20.25■□□□□ 0.83
UPF3A-211ENST00000618700 KANSL1LA0AUZ9 987 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 APODP05090 189 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 RHOCP08134 193 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 TARSP26639 723 aaKnown RBP20.24■□□□□ 0.83
UPF3A-211ENST00000618700 RWDD2BP57060 319 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 SLC12A1Q13621 1099 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 CCINQ13939 588 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 FUT11Q495W5 492 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 ANKRD20A8PQ5CZ79 823 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 ZNF783Q6ZMS7 281 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 C17orf53Q8N3J3 647 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-211ENST00000618700 PCDH19Q8TAB3 1148 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 WFIKKN2Q8TEU8 576 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 TRIM44Q96DX7 344 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-211ENST00000618700 ALG14Q96F25 216 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 RBM41Q96IZ5 413 aaKnown RBP20.24■□□□□ 0.83
UPF3A-211ENST00000618700 KLC2Q9H0B6 622 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 NOL6Q9H6R4 1146 aaKnown RBP20.24■□□□□ 0.83
UPF3A-211ENST00000618700 ETNK2Q9NVF9 386 aa20.24■□□□□ 0.83
UPF3A-211ENST00000618700 INTS6Q9UL03 887 aaKnown RBP20.24■□□□□ 0.83
UPF3A-211ENST00000618700 CHD5Q8TDI0 1954 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 ILVBLA1L0T0 632 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 DAPK3O43293 454 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 KIF5CO60282 957 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 DRD1P21728 446 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 AMPD1P23109 780 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 MZF1P28698 734 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-211ENST00000618700 CSKP41240 450 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 CDKN2BP42772 138 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 PLK1P53350 603 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 GRSF1Q12849 480 aaKnown RBP eCLIP20.23■□□□□ 0.83
UPF3A-211ENST00000618700 TMEM215Q68D42 235 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 SPOCD1Q6ZMY3 1216 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 ADIPOR2Q86V24 386 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 RCOR2Q8IZ40 523 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 AHI1Q8N157 1196 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 UMODL1-AS1Q8N2C9 162 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 PQLC3Q8N755 202 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 UBL4BQ8N7F7 174 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 RNF157Q96PX1 679 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 C1QTNF1Q9BXJ1 281 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 DONSONQ9NYP3 566 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 DNAI1Q9UI46 699 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 NDRG2Q9UN36 371 aaKnown RBP20.23■□□□□ 0.83
UPF3A-211ENST00000618700 ZKSCAN5Q9Y2L8 839 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 MRPS17Q9Y2R5 130 aaKnown RBP20.23■□□□□ 0.83
UPF3A-211ENST00000618700 MFHAS1Q9Y4C4 1052 aa20.23■□□□□ 0.83
UPF3A-211ENST00000618700 PRRT4C9JH25 899 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 ZRANB2O95218 330 aaKnown RBP eCLIP20.22■□□□□ 0.83
UPF3A-211ENST00000618700 EGFP01133 1207 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 DMC1Q14565 340 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 EIF4HQ15056 248 aaKnown RBP20.22■□□□□ 0.83
UPF3A-211ENST00000618700 PPP2R5EQ16537 467 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 PLEKHG6Q3KR16 790 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 ODF2Q5BJF6 829 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 PITRM1Q5JRX3 1037 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 ZNF569Q5MCW4 686 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 DCAF12L1Q5VU92 463 aa20.22■□□□□ 0.83
UPF3A-211ENST00000618700 RNF219Q5W0B1 726 aaPredicted RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms