RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FAM160A2Q8N612 972 aaPredicted RBP21.21■□□□□ 0.99
VPS53-210ENST00000571456 C12orf50Q8NA57 414 aaPredicted RBP21.21■□□□□ 0.99
VPS53-210ENST00000571456 FIBINQ8TAL6 211 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 TTC8Q8TAM2 541 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 WFIKKN2Q8TEU8 576 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 PRICKLE1Q96MT3 831 aaPredicted RBP21.21■□□□□ 0.99
VPS53-210ENST00000571456 OSGEPQ9NPF4 335 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 ARHGEF4Q9NR80 690 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 DNAJC17Q9NVM6 304 aaKnown RBP21.21■□□□□ 0.99
VPS53-210ENST00000571456 VANGL2Q9ULK5 521 aa21.21■□□□□ 0.99
VPS53-210ENST00000571456 REXO2Q9Y3B8 237 aaKnown RBP21.21■□□□□ 0.99
VPS53-210ENST00000571456 GOLGA6L7A0A1B0GV03 622 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 TBL1XO60907 577 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 LUC7L3O95232 432 aaKnown RBP21.2■□□□□ 0.98
VPS53-210ENST00000571456 KRT7P08729 469 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 CCDC175P0C221 793 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 TNFRSF4P43489 277 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 SOX9P48436 509 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 GALK1P51570 392 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 CCZ1BP86790 482 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 CCZ1P86791 482 aaPredicted RBP21.2■□□□□ 0.98
VPS53-210ENST00000571456 CDH18Q13634 790 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 EIF4HQ15056 248 aaKnown RBP21.2■□□□□ 0.98
VPS53-210ENST00000571456 SF3A2Q15428 464 aaKnown RBP21.2■□□□□ 0.98
VPS53-210ENST00000571456 POLNQ7Z5Q5 900 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 MFN1Q8IWA4 741 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 CCDC185Q8N715 623 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 ACRBPQ8NEB7 543 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 CHFRQ96EP1 664 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 ANLNQ9NQW6 1124 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 ADGRG1Q9Y653 693 aa21.2■□□□□ 0.98
VPS53-210ENST00000571456 E9PAM4 449 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 I6L893 689 aaPredicted RBP21.19■□□□□ 0.98
VPS53-210ENST00000571456 NPC1O15118 1278 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 TIMM44O43615 452 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 KRT86O43790 486 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 TSPAN3O60637 253 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 KAT7O95251 611 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 DMC1Q14565 340 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 PON2Q15165 354 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 HSF5Q4G112 596 aaPredicted RBP21.19■□□□□ 0.98
VPS53-210ENST00000571456 STPG1Q5TH74 334 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 MANEALQ5VSG8 457 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 LRRC38Q5VT99 294 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 C11orf63Q6NUN7 778 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 TXNDC11Q6PKC3 985 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 ANKS1BQ7Z6G8 1248 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 LONP2Q86WA8 852 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 ZNF683Q8IZ20 524 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 RNF10Q8N5U6 811 aaKnown RBP21.19■□□□□ 0.98
VPS53-210ENST00000571456 ARFGAP1Q8N6T3 406 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.19■□□□□ 0.98
VPS53-210ENST00000571456 TERB1Q8NA31 727 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 ZYG11BQ9C0D3 744 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 AP4E1Q9UPM8 1137 aa21.19■□□□□ 0.98
VPS53-210ENST00000571456 FGF10O15520 208 aaPredicted RBP21.18■□□□□ 0.98
VPS53-210ENST00000571456 HCAR3P49019 387 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 RPS24P62847 133 aaKnown RBP21.18■□□□□ 0.98
VPS53-210ENST00000571456 CCINQ13939 588 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 MESDQ14696 234 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 ZNF783Q6ZMS7 281 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 CEP68Q76N32 757 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 SETD3Q86TU7 594 aaPredicted RBP21.18■□□□□ 0.98
VPS53-210ENST00000571456 AHI1Q8N157 1196 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 CCAR2Q8N163 923 aaKnown RBP21.18■□□□□ 0.98
VPS53-210ENST00000571456 PHTF2Q8N3S3 785 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 TBC1D31Q96DN5 1066 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 SNRNP25Q9BV90 132 aaKnown RBP21.18■□□□□ 0.98
VPS53-210ENST00000571456 CATSPERBQ9H7T0 1116 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 RXFP3Q9NSD7 469 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 PLK2Q9NYY3 685 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 KIAA1522Q9P206 1035 aaPredicted RBP21.18■□□□□ 0.98
VPS53-210ENST00000571456 STIM2Q9P246 746 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 RCOR3Q9P2K3 495 aaPredicted RBP21.18■□□□□ 0.98
VPS53-210ENST00000571456 STARD13Q9Y3M8 1113 aa21.18■□□□□ 0.98
VPS53-210ENST00000571456 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.17■□□□□ 0.98
VPS53-210ENST00000571456 TMEM8BA6NDV4 472 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 H0Y626 953 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 MOCS3O95396 460 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 CISD3P0C7P0 127 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 ZNF806P0C7X5 589 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 RHOQP17081 205 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 HOXC13P31276 330 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 MAPKAPK2P49137 400 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 SLC25A11Q02978 314 aaKnown RBP21.17■□□□□ 0.98
VPS53-210ENST00000571456 SEMA3BQ13214 749 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 ZNF177Q13360 481 aaPredicted RBP21.17■□□□□ 0.98
VPS53-210ENST00000571456 DPYSL2Q16555 572 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 RAB6CQ53S08 254 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 C6orf118Q5T5N4 469 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 KIAA0907Q7Z7F0 614 aaPredicted RBP21.17■□□□□ 0.98
VPS53-210ENST00000571456 C12orf40Q86WS4 652 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 SYCE1Q8N0S2 351 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 SPEM1Q8N4L4 309 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 NAT16Q8N8M0 369 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 UCMAQ8WVF2 138 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 BHMTQ93088 406 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 IGSF8Q969P0 613 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 BTBD6Q96KE9 485 aa21.17■□□□□ 0.98
VPS53-210ENST00000571456 RAB6CQ9H0N0 254 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms