RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 MT-CYBP00156 380 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 MT-ND3P03897 115 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 UGT2B4P06133 528 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 EPHX1P07099 455 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CA4P22748 312 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 STX2P32856 288 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TIE1P35590 1138 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ABL2P42684 1182 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TNK2Q07912 1038 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 INCA1Q0VD86 236 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CFAP157Q5JU67 520 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 LY6G5CQ5SRR4 150 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 C6orf118Q5T5N4 469 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FOXR2Q6PJQ5 311 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 OLFML1Q6UWY5 402 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 C14orf80Q86SX3 495 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CREG2Q8IUH2 290 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 KRT222Q8N1A0 295 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ZMIZ2Q8NF64 920 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CDC26Q8NHZ8 85 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FAM76AQ8TAV0 307 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CASKIN2Q8WXE0 1202 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PIK3R5Q8WYR1 880 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 PSMG2Q969U7 264 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TTC17Q96AE7 1141 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 FUBP3Q96I24 572 aaKnown RBP eCLIP5.58□□□□□ -1.522e-7■□□□□ 9.9
VPS13C-209ENST00000560637 SLC22A12Q96S37 553 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 LINC00597Q9H2U6 94 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 OSGEPL1Q9H4B0 414 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 MTG2Q9H4K7 406 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 ELAC1Q9H777 363 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TDP1Q9NUW8 608 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 HACD3Q9P035 362 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 EVLQ9UI08 416 aaPredicted RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TLK1Q9UKI8 766 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 TPX2Q9ULW0 747 aaKnown RBP5.58□□□□□ -1.52
VPS13C-209ENST00000560637 CHKBQ9Y259 395 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 SLC30A1Q9Y6M5 507 aa5.58□□□□□ -1.52
VPS13C-209ENST00000560637 GPR179Q6PRD1 2367 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 NUMA1Q14980 2115 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 MYH10P35580 1976 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 SIPA1L1O43166 1804 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 A0A0A6YYK5 440 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 RASA4BC9J798 803 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 GIPC1O14908 333 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PJA2O43164 708 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 RASA4O43374 803 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 FAM189A1O60320 539 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 ACSL4O60488 711 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 SYF2O95926 243 aaKnown RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 CTSAP10619 480 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 ACADMP11310 421 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 COL6A1P12109 1028 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 SSTR1P30872 391 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 ACVRL1P37023 503 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PXNP49023 591 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PMS2P54278 862 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 ADCY2Q08462 1091 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 STARD3Q14849 445 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 ZBTB6Q15916 424 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 LGSNQ5TDP6 509 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 MROH9Q5TGP6 573 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 FBXL22Q6P050 247 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 ANKS1BQ7Z6G8 1248 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 BBS7Q8IWZ6 715 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 NDUFAF2Q8N183 169 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 DEFB119Q8N690 84 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PRELID2Q8N945 189 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 OR52K1Q8NGK4 314 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PBXIP1Q96AQ6 731 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PPP1R36Q96LQ0 422 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 NUDCD1Q96RS6 583 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 DCLK3Q9C098 648 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 LATS2Q9NRM7 1088 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 UTP6Q9NYH9 597 aaKnown RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 KIAA1522Q9P206 1035 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PAK5Q9P286 719 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 RWDD3Q9Y3V2 267 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 KIAA0355O15063 1070 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 TRIM24O15164 1050 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 IRAK2O43187 625 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 SERPINF2P08697 491 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 MMP13P45452 471 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 PAPOLAP51003 745 aaKnown RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 BMPR2Q13873 1038 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 TMEM110Q86TL2 294 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 RASSF3Q86WH2 238 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 TDHQ8IZJ6 230 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 LRCH3Q96II8 777 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 BTN2A3PQ96KV6 586 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 DDX23Q9BUQ8 820 aaKnown RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 C2orf49Q9BVC5 232 aaPredicted RBP5.57□□□□□ -1.52
VPS13C-209ENST00000560637 SLC4A5Q9BY07 1137 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 TMEM30AQ9NV96 361 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 GTSE1Q9NYZ3 720 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 MTRRQ9UBK8 725 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 INVSQ9Y283 1065 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 DNAJC16Q9Y2G8 782 aa5.57□□□□□ -1.52
VPS13C-209ENST00000560637 ACTL7AQ9Y615 435 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms