RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 PRAMEF26H0Y7S4 382 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 FFAR2O15552 330 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 KLRC4O43908 158 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 DXOO77932 396 aaKnown RBP18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 GTF2H1P32780 548 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 PSMC2P35998 433 aaKnown RBP18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 CTSOP43234 321 aaPredicted RBP18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 ME1P48163 572 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 RPS24P62847 133 aaKnown RBP18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 ENPEPQ07075 957 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 SETMARQ53H47 684 aaPredicted RBP18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 OR4C6Q8NH72 309 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 UBA3Q8TBC4 463 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 CCDC47Q96A33 483 aaKnown RBP18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 MED8Q96G25 268 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 LMLNQ96KR4 655 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 RAB20Q9NX57 234 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 CYTH4Q9UIA0 394 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 SLCO3A1Q9UIG8 710 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 ITIH6Q6UXX5 1313 aa18.43■□□□□ 0.54
TSPAN3-208ENST00000560514 C10orf142B7Z368 130 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 SLC7A4O43246 635 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 OPA1O60313 960 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 CSO75390 466 aaKnown RBP18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 LUC7L3O95232 432 aaKnown RBP18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 IGLV3-27P01718 113 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 SETSIPP0DME0 302 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 RBMS1P29558 406 aaKnown RBP18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 DAOAP59103 153 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 NUCB2P80303 420 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 FAM46CQ5VWP2 391 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 MMS22LQ6ZRQ5 1243 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 PRICKLE2Q7Z3G6 844 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 FBXL13Q8NEE6 735 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 KCTD13Q8WZ19 329 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 TTC9Q92623 222 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 PTPRN2Q92932 1015 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 CCDC97Q96F63 343 aaPredicted RBP18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 VCPIP1Q96JH7 1222 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 RPL10LQ96L21 214 aaKnown RBP18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 PRICKLE1Q96MT3 831 aaPredicted RBP18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 FOXD4L1Q9NU39 408 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 ARHGAP20Q9P2F6 1191 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 SERTAD1Q9UHV2 236 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 DOCK9Q9BZ29 2069 aa18.42■□□□□ 0.54
TSPAN3-208ENST00000560514 SPTA1P02549 2419 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 STX10O60499 249 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 DGKAP23743 735 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 MXI1P50539 228 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 DUSP3P51452 185 aaPredicted RBP18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 YWHAEP62258 255 aaKnown RBP18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 POM121L1PQ3SYA9 428 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 FSCBQ5H9T9 825 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 CDCP2Q5VXM1 449 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 NADSYN1Q6IA69 706 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 CFAP52Q8N1V2 620 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 SCML4Q8N228 414 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 SLC25A45Q8N413 288 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 IRGQQ8WZA9 623 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 SEMA4DQ92854 862 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 PAGE5Q96GU1 130 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 SPAG5Q96R06 1193 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 OSBPL2Q9H1P3 480 aa18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 HEMK1Q9Y5R4 338 aaPredicted RBP18.41■□□□□ 0.54
TSPAN3-208ENST00000560514 A0A1B0GVM2 712 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 PLRG1O43660 514 aaKnown RBP18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 RNGTTO60942 597 aaKnown RBP18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 RTN2O75298 545 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 GP1BAP07359 652 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 THEGLP0DJG4 465 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 CKMT1AP12532 417 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 DRD3P35462 400 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 ADAM9Q13443 819 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 NFIL3Q16649 462 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 MS4A13Q5J8X5 152 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 RESP18Q5W5W9 173 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 TRIM69Q86WT6 500 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 OR8D1Q8WZ84 308 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 NUCKS1Q9H1E3 243 aaKnown RBP18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 KLHL11Q9NVR0 708 aa18.4■□□□□ 0.54
TSPAN3-208ENST00000560514 HECTD1Q9ULT8 2610 aa18.39■□□□□ 0.54
TSPAN3-208ENST00000560514 NEMP2A6NFY4 417 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 C1QTNF3-AMACRE9PGA6 284 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 MOCS2O96007 188 aaPredicted RBP18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 LTFP02788 710 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 ZSCAN22P10073 491 aaPredicted RBP18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 VDRP11473 427 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 ZNF18P17022 549 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 RGS7P49802 495 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 STK19P49842 368 aaPredicted RBP18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 SULT2A1Q06520 285 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 DCAF6Q58WW2 860 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 C3orf38Q5JPI3 329 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 MAPK15Q8TD08 544 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 SNRNP27Q8WVK2 155 aaKnown RBP18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 SERPINB11Q96P15 392 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 FAM117AQ9C073 453 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 UCKL1Q9NWZ5 548 aa18.39■□□□□ 0.53
TSPAN3-208ENST00000560514 TJP2Q9UDY2 1190 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms