RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	TRIM58	Q8NG06	486 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	PJA1	Q8NG27	643 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	FAM71B	Q8TC56	605 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	UCMA	Q8WVF2	138 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	CSPG4P5	Q96PW8	444 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	ZNF670	Q9BS34	389 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	MUC3B	Q9H195	1237 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	EPHX3	Q9H6B9	360 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	FBRSL1	Q9HCM7	1045 aa	Known RBP	13.52	□□□□□ -0.25
SF1-206	ENST00000413725	TRMT1	Q9NXH9	659 aa	Known RBP	13.52	□□□□□ -0.25
SF1-206	ENST00000413725	CWC15	Q9P013	229 aa	Known RBP	13.52	□□□□□ -0.25
SF1-206	ENST00000413725	PYCARD	Q9ULZ3	195 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	KMT2E	Q8IZD2	1858 aa		13.52	□□□□□ -0.25
SF1-206	ENST00000413725	ANKRD36	A6QL64	1941 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	MUC22	E2RYF6	1773 aa	Predicted RBP	13.51	□□□□□ -0.25
SF1-206	ENST00000413725		A0A0A0MRY4	1105 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	ILVBL	A1L0T0	632 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	ZNF487	B1APH4	448 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	TIMM44	O43615	452 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	FTCD	O95954	541 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	ERCC2	P18074	760 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	POLR2E	P19388	210 aa	Known RBP	13.51	□□□□□ -0.25
SF1-206	ENST00000413725	KDELR1	P24390	212 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	MSN	P26038	577 aa	Known RBP	13.51	□□□□□ -0.25
SF1-206	ENST00000413725	CTNNA2	P26232	953 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	CD70	P32970	193 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	CSK	P41240	450 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	CCIN	Q13939	588 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	DPYS	Q14117	519 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	DPYSL3	Q14195	570 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	GEN1	Q17RS7	908 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	RNF219	Q5W0B1	726 aa	Predicted RBP	13.51	□□□□□ -0.25
SF1-206	ENST00000413725	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	13.51	□□□□□ -0.25
SF1-206	ENST00000413725	REXO1L1P	Q8IX06	675 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	KATNAL2	Q8IYT4	538 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	SYNPO	Q8N3V7	929 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	RAPGEF5	Q92565	580 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	TSC1	Q92574	1164 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	PBXIP1	Q96AQ6	731 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	TRIM44	Q96DX7	344 aa	Predicted RBP	13.51	□□□□□ -0.25
SF1-206	ENST00000413725	RBM41	Q96IZ5	413 aa	Known RBP	13.51	□□□□□ -0.25
SF1-206	ENST00000413725	CIPC	Q9C0C6	399 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	ZNF212	Q9UDV6	495 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	DNAI1	Q9UI46	699 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	SIT1	Q9Y3P8	196 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725	PCDHA3	Q9Y5H8	950 aa		13.51	□□□□□ -0.25
SF1-206	ENST00000413725		K7EQS6	105 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	RAMP2	O60895	175 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
SF1-206	ENST00000413725	PDGFB	P01127	241 aa	Predicted RBP	13.5	□□□□□ -0.25
SF1-206	ENST00000413725	ATP5B	P06576	529 aa	Known RBP	13.5	□□□□□ -0.25
SF1-206	ENST00000413725	CD48	P09326	243 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	CHRNB1	P11230	501 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	SERPINB6	P35237	376 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	MAGEA9	P43362	315 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	PLK1	P53350	603 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	RWDD2B	P57060	319 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	GNA12	Q03113	381 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	SULT2A1	Q06520	285 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	MESP2	Q0VG99	397 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	MMRN1	Q13201	1228 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	PLEKHG6	Q3KR16	790 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	FUT11	Q495W5	492 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	PITRM1	Q5JRX3	1037 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	MBLAC2	Q68D91	279 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	CWF19L1	Q69YN2	538 aa	Known RBP	13.5	□□□□□ -0.25
SF1-206	ENST00000413725	TMCO3	Q6UWJ1	677 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	BMP8A	Q7Z5Y6	402 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	CCDC50	Q8IVM0	306 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	CCDC105	Q8IYK2	499 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	RCOR2	Q8IZ40	523 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	ZNF687	Q8N1G0	1237 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	LZTR1	Q8N653	840 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	EXD1	Q8NHP7	514 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	KCNV2	Q8TDN2	545 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	13.5	□□□□□ -0.25
SF1-206	ENST00000413725	KRT35	Q92764	455 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	LMLN	Q96KR4	655 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	FEM1A	Q9BSK4	669 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	MAK16	Q9BXY0	300 aa	Known RBP	13.5	□□□□□ -0.25
SF1-206	ENST00000413725	MAGEH1	Q9H213	219 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	LMAN1L	Q9HAT1	526 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	VPS28	Q9UK41	221 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	MTF2	Q9Y483	593 aa	Predicted RBP	13.5	□□□□□ -0.25
SF1-206	ENST00000413725	ZNF318	Q5VUA4	2279 aa		13.5	□□□□□ -0.25
SF1-206	ENST00000413725	PRRT4	C9JH25	899 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	DCLK1	O15075	740 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	NPC1	O15118	1278 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	KIF5C	O60282	957 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	RNF40	O75150	1001 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	ASL	P04424	464 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	AOC1	P19801	751 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	AMPD1	P23109	780 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	MZF1	P28698	734 aa	Predicted RBP	13.49	□□□□□ -0.25
SF1-206	ENST00000413725	CETN2	P41208	172 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	RPS9	P46781	194 aa	Known RBP	13.49	□□□□□ -0.25
SF1-206	ENST00000413725	MARCKSL1	P49006	195 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	CLCN5	P51795	746 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	NDST2	P52849	883 aa		13.49	□□□□□ -0.25
SF1-206	ENST00000413725	SEC13	P55735	322 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms