RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ARHGEF5Q12774 1597 aa12.87□□□□□ -0.35
LIG1-220ENST00000601091 TSR2Q969E8 191 aaKnown RBP12.87□□□□□ -0.35
LIG1-220ENST00000601091 C22orf23Q9BZE7 217 aa12.86□□□□□ -0.35
LIG1-220ENST00000601091 ADGRL1O94910 1474 aa12.86□□□□□ -0.35
LIG1-220ENST00000601091 ZBTB12Q9Y330 459 aaPredicted RBP12.86□□□□□ -0.35
LIG1-220ENST00000601091 PHF14O94880 888 aa12.86□□□□□ -0.35
LIG1-220ENST00000601091 AXDND1Q5T1B0 1012 aaPredicted RBP12.86□□□□□ -0.35
LIG1-220ENST00000601091 SLC52A1Q9NWF4 448 aa12.86□□□□□ -0.35
LIG1-220ENST00000601091 ABCA8O94911 1581 aa12.85□□□□□ -0.35
LIG1-220ENST00000601091 RBM25P49756 843 aaKnown RBP12.85□□□□□ -0.35
LIG1-220ENST00000601091 MVPQ14764 893 aaKnown RBP12.85□□□□□ -0.35
LIG1-220ENST00000601091 RTF1Q92541 710 aaKnown RBP12.85□□□□□ -0.35
LIG1-220ENST00000601091 APBB1O00213 710 aa12.85□□□□□ -0.35
LIG1-220ENST00000601091 FANCAO15360 1455 aa12.85□□□□□ -0.35
LIG1-220ENST00000601091 CHMP4CQ96CF2 233 aa12.85□□□□□ -0.35
LIG1-220ENST00000601091 PIK3C2GO75747 1445 aa12.85□□□□□ -0.35
LIG1-220ENST00000601091 C14orf93Q9H972 538 aaKnown RBP12.84□□□□□ -0.35
LIG1-220ENST00000601091 CHMP5Q9NZZ3 219 aa12.84□□□□□ -0.35
LIG1-220ENST00000601091 COG3Q96JB2 828 aa12.84□□□□□ -0.35
LIG1-220ENST00000601091 PRAM1Q96QH2 718 aa12.84□□□□□ -0.35
LIG1-220ENST00000601091 DNAJC2Q99543 621 aaKnown RBP12.84□□□□□ -0.35
LIG1-220ENST00000601091 LNPKQ9C0E8 428 aa12.84□□□□□ -0.35
LIG1-220ENST00000601091 ZBTB7CA1YPR0 619 aa12.83□□□□□ -0.36
LIG1-220ENST00000601091 BLMP54132 1417 aaPredicted RBP12.83□□□□□ -0.36
LIG1-220ENST00000601091 IGHDP01880 384 aa12.83□□□□□ -0.36
LIG1-220ENST00000601091 ATF7IPQ6VMQ6 1270 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 ZNF692Q9BU19 519 aaPredicted RBP12.82□□□□□ -0.36
LIG1-220ENST00000601091 NPC1L1Q9UHC9 1359 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 RAPGEF3O95398 923 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 GNAI1P63096 354 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 CARD14Q9BXL6 1004 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 NOS1P29475 1434 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 DDX11L8A8MPP1 907 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 HMOX1P09601 288 aa12.82□□□□□ -0.36
LIG1-220ENST00000601091 NOB1Q9ULX3 412 aaKnown RBP12.82□□□□□ -0.36
LIG1-220ENST00000601091 RTEL1-TNFRSF6BF6WH68 1400 aa12.81□□□□□ -0.36
LIG1-220ENST00000601091 SEC24BO95487 1268 aa12.81□□□□□ -0.36
LIG1-220ENST00000601091 BCORL1Q5H9F3 1711 aa12.81□□□□□ -0.36
LIG1-220ENST00000601091 TMPOP42166 694 aaKnown RBP12.81□□□□□ -0.36
LIG1-220ENST00000601091 API5Q9BZZ5 524 aaKnown RBP12.81□□□□□ -0.36
LIG1-220ENST00000601091 FOXD4L1Q9NU39 408 aa12.81□□□□□ -0.36
LIG1-220ENST00000601091 PRKAR2BP31323 418 aa12.8□□□□□ -0.36
LIG1-220ENST00000601091 ZMYM4Q5VZL5 1548 aa12.8□□□□□ -0.36
LIG1-220ENST00000601091 ABCC2Q92887 1545 aa12.8□□□□□ -0.36
LIG1-220ENST00000601091 KDM5DQ9BY66 1539 aa12.8□□□□□ -0.36
LIG1-220ENST00000601091 POLR3AO14802 1390 aaPredicted RBP12.8□□□□□ -0.36
LIG1-220ENST00000601091 SPINK5Q9NQ38 1064 aaPredicted RBP12.8□□□□□ -0.36
LIG1-220ENST00000601091 HMMRO75330 724 aa12.79□□□□□ -0.36
LIG1-220ENST00000601091 C8orf34Q49A92 452 aa12.79□□□□□ -0.36
LIG1-220ENST00000601091 CABP1Q9NZU7 370 aa12.79□□□□□ -0.36
LIG1-220ENST00000601091 FAM13BQ9NYF5 915 aa12.79□□□□□ -0.36
LIG1-220ENST00000601091 ATAD2Q6PL18 1390 aa12.79□□□□□ -0.36
LIG1-220ENST00000601091 SETQ01105 290 aaPredicted RBP12.79□□□□□ -0.36
LIG1-220ENST00000601091 FOXD4L6Q3SYB3 417 aaPredicted RBP12.79□□□□□ -0.36
LIG1-220ENST00000601091 FOXD4L3Q6VB84 417 aaPredicted RBP12.79□□□□□ -0.36
LIG1-220ENST00000601091 CDK19Q9BWU1 502 aa12.79□□□□□ -0.36
LIG1-220ENST00000601091 ZBTB9Q96C00 473 aa12.78□□□□□ -0.36
LIG1-220ENST00000601091 KDM2BQ8NHM5 1336 aa12.78□□□□□ -0.36
LIG1-220ENST00000601091 STK31Q9BXU1 1019 aa12.78□□□□□ -0.36
LIG1-220ENST00000601091 SAMD9LQ8IVG5 1584 aa12.78□□□□□ -0.36
LIG1-220ENST00000601091 MAST1Q9Y2H9 1570 aa12.77□□□□□ -0.36
LIG1-220ENST00000601091 ARID4AP29374 1257 aaPredicted RBP12.77□□□□□ -0.36
LIG1-220ENST00000601091 CD109Q6YHK3 1445 aa12.77□□□□□ -0.36
LIG1-220ENST00000601091 PLA2R1Q13018 1463 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 CYB5RLQ6IPT4 315 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 SLC4A10Q6U841 1118 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 ADCY10Q96PN6 1610 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 NUTM2FA1L443 756 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 FCHSD2O94868 740 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 CCDC27Q2M243 656 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 SSH1Q8WYL5 1049 aa12.77□□□□□ -0.37
LIG1-220ENST00000601091 PANK2Q9BZ23 570 aa12.76□□□□□ -0.37
LIG1-220ENST00000601091 IDI1Q13907 227 aa12.76□□□□□ -0.37
LIG1-220ENST00000601091 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.76□□□□□ -0.37
LIG1-220ENST00000601091 NSD2O96028 1365 aa12.75□□□□□ -0.37
LIG1-220ENST00000601091 CGNQ9P2M7 1197 aaKnown RBP12.75□□□□□ -0.37
LIG1-220ENST00000601091 RRAGDQ9NQL2 400 aaPredicted RBP12.75□□□□□ -0.37
LIG1-220ENST00000601091 CDC42BPAQ5VT25 1732 aa12.75□□□□□ -0.37
LIG1-220ENST00000601091 SKOR2Q2VWA4 1001 aaPredicted RBP12.75□□□□□ -0.37
LIG1-220ENST00000601091 FOXD4L5Q5VV16 416 aaPredicted RBP12.75□□□□□ -0.37
LIG1-220ENST00000601091 FOXD4L4Q8WXT5 416 aaPredicted RBP12.75□□□□□ -0.37
LIG1-220ENST00000601091 PCDHB15Q9Y5E8 787 aa12.75□□□□□ -0.37
LIG1-220ENST00000601091 MAGI2Q86UL8 1455 aa12.75□□□□□ -0.37
LIG1-220ENST00000601091 TMEM57Q8N5G2 664 aa12.74□□□□□ -0.37
LIG1-220ENST00000601091 RAD21O60216 631 aa12.74□□□□□ -0.37
LIG1-220ENST00000601091 BANK1Q8NDB2 785 aa12.74□□□□□ -0.37
LIG1-220ENST00000601091 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.74□□□□□ -0.37
LIG1-220ENST00000601091 GCC1Q96CN9 775 aa12.74□□□□□ -0.37
LIG1-220ENST00000601091 ST18O60284 1047 aa12.74□□□□□ -0.37
LIG1-220ENST00000601091 ABCC11Q96J66 1382 aa12.73□□□□□ -0.37
LIG1-220ENST00000601091 ZBTB22O15209 634 aa12.73□□□□□ -0.37
LIG1-220ENST00000601091 AMPHP49418 695 aa12.73□□□□□ -0.37
LIG1-220ENST00000601091 TWISTNBQ3B726 338 aaPredicted RBP12.73□□□□□ -0.37
LIG1-220ENST00000601091 SMAP1Q8IYB5 467 aaPredicted RBP12.73□□□□□ -0.37
LIG1-220ENST00000601091 TRIM27P14373 513 aa12.72□□□□□ -0.37
LIG1-220ENST00000601091 NGDNQ8NEJ9 315 aaKnown RBP12.72□□□□□ -0.37
LIG1-220ENST00000601091 WDR7Q9Y4E6 1490 aa12.72□□□□□ -0.37
LIG1-220ENST00000601091 TNNT3P45378 269 aaPredicted RBP12.72□□□□□ -0.37
LIG1-220ENST00000601091 FAM69CQ0P6D2 419 aa12.72□□□□□ -0.37
LIG1-220ENST00000601091 GOLIM4O00461 696 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms