RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 THUMPD2Q9BTF0 503 aaKnown RBP13.44□□□□□ -0.26
TOP3A-209ENST00000580095 ZRANB1Q9UGI0 708 aa13.44□□□□□ -0.26
TOP3A-209ENST00000580095 YTHDC2Q9H6S0 1430 aaKnown RBP13.44□□□□□ -0.26
TOP3A-209ENST00000580095 ABCC11Q96J66 1382 aa13.44□□□□□ -0.26
TOP3A-209ENST00000580095 HMOX1P09601 288 aa13.44□□□□□ -0.26
TOP3A-209ENST00000580095 ARHGEF28Q8N1W1 1705 aaKnown RBP13.44□□□□□ -0.26
TOP3A-209ENST00000580095 SSH1Q8WYL5 1049 aa13.43□□□□□ -0.26
TOP3A-209ENST00000580095 PDZRN3Q9UPQ7 1066 aa13.43□□□□□ -0.26
TOP3A-209ENST00000580095 REREQ9P2R6 1566 aa13.43□□□□□ -0.26
TOP3A-209ENST00000580095 IL27Q8NEV9 243 aa13.43□□□□□ -0.26
TOP3A-209ENST00000580095 CCDC27Q2M243 656 aa13.43□□□□□ -0.26
TOP3A-209ENST00000580095 HDGFL2Q7Z4V5 671 aaPredicted RBP13.43□□□□□ -0.26
TOP3A-209ENST00000580095 DIAPH1O60610 1272 aaKnown RBP13.42□□□□□ -0.26
TOP3A-209ENST00000580095 PTPRMP28827 1452 aa13.42□□□□□ -0.26
TOP3A-209ENST00000580095 NFKBIBQ15653 356 aa13.42□□□□□ -0.26
TOP3A-209ENST00000580095 ITPRIPQ8IWB1 547 aa13.42□□□□□ -0.26
TOP3A-209ENST00000580095 USP19O94966 1318 aa13.41□□□□□ -0.26
TOP3A-209ENST00000580095 TRIM27P14373 513 aa13.41□□□□□ -0.26
TOP3A-209ENST00000580095 ARHGAP31Q2M1Z3 1444 aa13.41□□□□□ -0.26
TOP3A-209ENST00000580095 DZIP1LQ8IYY4 767 aaKnown RBP13.41□□□□□ -0.26
TOP3A-209ENST00000580095 MYO5BQ9ULV0 1848 aa13.41□□□□□ -0.26
TOP3A-209ENST00000580095 ELL2O00472 640 aaPredicted RBP13.41□□□□□ -0.26
TOP3A-209ENST00000580095 ZKSCAN2Q63HK3 967 aa13.41□□□□□ -0.26
TOP3A-209ENST00000580095 TXNDC2Q86VQ3 553 aa13.41□□□□□ -0.26
TOP3A-209ENST00000580095 NOB1Q9ULX3 412 aaKnown RBP13.41□□□□□ -0.26
TOP3A-209ENST00000580095 MVPQ14764 893 aaKnown RBP13.4□□□□□ -0.26
TOP3A-209ENST00000580095 PUS7Q96PZ0 661 aaKnown RBP13.4□□□□□ -0.26
TOP3A-209ENST00000580095 EMILIN1Q9Y6C2 1016 aa13.4□□□□□ -0.26
TOP3A-209ENST00000580095 TSPOAP1O95153 1857 aa13.4□□□□□ -0.26
TOP3A-209ENST00000580095 NSD2O96028 1365 aa13.4□□□□□ -0.26
TOP3A-209ENST00000580095 NUTM2FA1L443 756 aa13.4□□□□□ -0.26
TOP3A-209ENST00000580095 PRKAR2BP31323 418 aa13.4□□□□□ -0.26
TOP3A-209ENST00000580095 CD163L1Q9NR16 1453 aa13.4□□□□□ -0.26
TOP3A-209ENST00000580095 PHACTR3Q96KR7 559 aa13.4□□□□□ -0.27
TOP3A-209ENST00000580095 ATAD2Q6PL18 1390 aa13.4□□□□□ -0.27
TOP3A-209ENST00000580095 NME9Q86XW9 330 aa13.39□□□□□ -0.27
TOP3A-209ENST00000580095 PMFBP1Q8TBY8 1022 aa13.39□□□□□ -0.27
TOP3A-209ENST00000580095 POLKQ9UBT6 870 aa13.39□□□□□ -0.27
TOP3A-209ENST00000580095 PLPPR3Q6T4P5 718 aa13.38□□□□□ -0.27
TOP3A-209ENST00000580095 RTN4Q9NQC3 1192 aaKnown RBP13.38□□□□□ -0.27
TOP3A-209ENST00000580095 FRAT2O75474 233 aaPredicted RBP13.38□□□□□ -0.27
TOP3A-209ENST00000580095 SLKQ9H2G2 1235 aaPredicted RBP13.38□□□□□ -0.27
TOP3A-209ENST00000580095 RRS1Q15050 365 aaKnown RBP13.37□□□□□ -0.27
TOP3A-209ENST00000580095 RWDD1Q9H446 243 aaPredicted RBP13.37□□□□□ -0.27
TOP3A-209ENST00000580095 NINLQ9Y2I6 1382 aa13.37□□□□□ -0.27
TOP3A-209ENST00000580095 TMEM131LA2VDJ0 1609 aa13.37□□□□□ -0.27
TOP3A-209ENST00000580095 TMEM57Q8N5G2 664 aa13.37□□□□□ -0.27
TOP3A-209ENST00000580095 ZFYVE9O95405 1425 aa13.37□□□□□ -0.27
TOP3A-209ENST00000580095 SPRYD3Q8NCJ5 442 aa13.36□□□□□ -0.27
TOP3A-209ENST00000580095 NLRP1Q9C000 1473 aa13.36□□□□□ -0.27
TOP3A-209ENST00000580095 ATF7IPQ6VMQ6 1270 aa13.36□□□□□ -0.27
TOP3A-209ENST00000580095 ARHGEF40Q8TER5 1519 aa13.35□□□□□ -0.27
TOP3A-209ENST00000580095 USP32Q8NFA0 1604 aa13.35□□□□□ -0.27
TOP3A-209ENST00000580095 ALKQ9UM73 1620 aa13.35□□□□□ -0.27
TOP3A-209ENST00000580095 PREX1Q8TCU6 1659 aa13.35□□□□□ -0.27
TOP3A-209ENST00000580095 SOX12O15370 315 aa13.35□□□□□ -0.27
TOP3A-209ENST00000580095 COL3A1P02461 1466 aaPredicted RBP13.35□□□□□ -0.27
TOP3A-209ENST00000580095 AGLP35573 1532 aa13.35□□□□□ -0.27
TOP3A-209ENST00000580095 TSPYL6Q8N831 410 aa13.34□□□□□ -0.27
TOP3A-209ENST00000580095 C1orf115Q9H7X2 142 aa13.34□□□□□ -0.27
TOP3A-209ENST00000580095 METP08581 1390 aa13.33□□□□□ -0.27
TOP3A-209ENST00000580095 DCTN1Q14203 1278 aa13.33□□□□□ -0.27
TOP3A-209ENST00000580095 RSPH6AQ9H0K4 717 aa13.33□□□□□ -0.27
TOP3A-209ENST00000580095 USP35Q9P2H5 1018 aa13.33□□□□□ -0.27
TOP3A-209ENST00000580095 FAM83GA6ND36 823 aa13.33□□□□□ -0.28
TOP3A-209ENST00000580095 RIMS2Q9UQ26 1411 aa13.32□□□□□ -0.28
TOP3A-209ENST00000580095 FCHSD2O94868 740 aa13.31□□□□□ -0.28
TOP3A-209ENST00000580095 MFAP1P55081 439 aaKnown RBP13.31□□□□□ -0.28
TOP3A-209ENST00000580095 ESF1Q9H501 851 aaKnown RBP13.31□□□□□ -0.28
TOP3A-209ENST00000580095 WASLO00401 505 aaPredicted RBP13.31□□□□□ -0.28
TOP3A-209ENST00000580095 NUDT16Q96DE0 195 aaKnown RBP13.31□□□□□ -0.28
TOP3A-209ENST00000580095 A2ML1A8K2U0 1454 aa13.3□□□□□ -0.28
TOP3A-209ENST00000580095 LNPKQ9C0E8 428 aa13.3□□□□□ -0.28
TOP3A-209ENST00000580095 ADGRB2O60241 1585 aa13.3□□□□□ -0.28
TOP3A-209ENST00000580095 DDX19BQ9UMR2 479 aa13.3□□□□□ -0.28
TOP3A-209ENST00000580095 PNPLA6Q8IY17 1366 aa13.3□□□□□ -0.28
TOP3A-209ENST00000580095 PPIP5K1Q6PFW1 1433 aa13.29□□□□□ -0.28
TOP3A-209ENST00000580095 UPF2Q9HAU5 1272 aaKnown RBP13.29□□□□□ -0.28
TOP3A-209ENST00000580095 ZBTB40Q9NUA8 1239 aa13.29□□□□□ -0.28
TOP3A-209ENST00000580095 GSE1Q14687 1217 aa13.28□□□□□ -0.28
TOP3A-209ENST00000580095 AEBP1Q8IUX7 1158 aa13.28□□□□□ -0.28
TOP3A-209ENST00000580095 NFE2L2Q16236 605 aa13.28□□□□□ -0.28
TOP3A-209ENST00000580095 IL13P35225 146 aa13.27□□□□□ -0.28
TOP3A-209ENST00000580095 KRT24Q2M2I5 525 aa13.27□□□□□ -0.28
TOP3A-209ENST00000580095 TBC1D32Q96NH3 1257 aa13.27□□□□□ -0.28
TOP3A-209ENST00000580095 MBIPQ9NS73 344 aa13.27□□□□□ -0.28
TOP3A-209ENST00000580095 LRRC7Q96NW7 1537 aa13.27□□□□□ -0.28
TOP3A-209ENST00000580095 CT47B1P0C2W7 299 aaPredicted RBP13.27□□□□□ -0.29
TOP3A-209ENST00000580095 COG3Q96JB2 828 aa13.27□□□□□ -0.29
TOP3A-209ENST00000580095 BRPF3Q9ULD4 1205 aa13.27□□□□□ -0.29
TOP3A-209ENST00000580095 C8orf58Q8NAV2 365 aa13.26□□□□□ -0.29
TOP3A-209ENST00000580095 TBC1D2Q9BYX2 928 aa13.26□□□□□ -0.29
TOP3A-209ENST00000580095 IL16Q14005 1332 aa13.26□□□□□ -0.29
TOP3A-209ENST00000580095 VAMP4O75379 141 aa13.26□□□□□ -0.29
TOP3A-209ENST00000580095 AAMPQ13685 434 aa13.26□□□□□ -0.29
TOP3A-209ENST00000580095 IPO8O15397 1037 aaKnown RBP13.26□□□□□ -0.29
TOP3A-209ENST00000580095 CEBPAP49715 358 aaPredicted RBP13.26□□□□□ -0.29
TOP3A-209ENST00000580095 PNNQ9H307 717 aaKnown RBP13.26□□□□□ -0.29
TOP3A-209ENST00000580095 CLTCQ00610 1675 aaKnown RBP13.26□□□□□ -0.29
TOP3A-209ENST00000580095 PRR36Q9H6K5 1346 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 158.2 ms