RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	SAFB2	Q14151	953 aa	Known RBP eCLIP	8.08	□□□□□ -1.12
CLN3-223	ENST00000566472	PLEKHF1	Q96S99	279 aa		8.08	□□□□□ -1.12
CLN3-223	ENST00000566472	TMEM2	Q9UHN6	1383 aa		8.08	□□□□□ -1.12
CLN3-223	ENST00000566472	CDK12	Q9NYV4	1490 aa	Predicted RBP	8.07	□□□□□ -1.12
CLN3-223	ENST00000566472	WASL	O00401	505 aa	Predicted RBP	8.07	□□□□□ -1.12
CLN3-223	ENST00000566472	DIAPH1	O60610	1272 aa	Known RBP	8.07	□□□□□ -1.12
CLN3-223	ENST00000566472	CANX	P27824	592 aa	Known RBP	8.07	□□□□□ -1.12
CLN3-223	ENST00000566472	DDRGK1	Q96HY6	314 aa		8.07	□□□□□ -1.12
CLN3-223	ENST00000566472	GGNBP2	Q9H3C7	697 aa		8.07	□□□□□ -1.12
CLN3-223	ENST00000566472	TMPO	P42166	694 aa	Known RBP	8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	FAM161A	Q3B820	660 aa		8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	PMFBP1	Q8TBY8	1022 aa		8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	CLUAP1	Q96AJ1	413 aa		8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	CABP1	Q9NZU7	370 aa		8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	ZBTB47	Q9UFB7	747 aa	Predicted RBP	8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	PLEKHG1	Q9ULL1	1385 aa		8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	MON2	Q7Z3U7	1717 aa		8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	UBR1	Q8IWV7	1749 aa		8.06	□□□□□ -1.12
CLN3-223	ENST00000566472	PPIP5K1	Q6PFW1	1433 aa		8.05	□□□□□ -1.12
CLN3-223	ENST00000566472	LRRC7	Q96NW7	1537 aa		8.05	□□□□□ -1.12
CLN3-223	ENST00000566472	FCHSD2	O94868	740 aa		8.05	□□□□□ -1.12
CLN3-223	ENST00000566472	ZNF428	Q96B54	188 aa		8.05	□□□□□ -1.12
CLN3-223	ENST00000566472	RRP7A	Q9Y3A4	280 aa	Known RBP	8.05	□□□□□ -1.12
CLN3-223	ENST00000566472	MET	P08581	1390 aa		8.05	□□□□□ -1.12
CLN3-223	ENST00000566472	ADAMTS13	Q76LX8	1427 aa		8.04	□□□□□ -1.12
CLN3-223	ENST00000566472	U2SURP	O15042	1029 aa	Known RBP	8.04	□□□□□ -1.12
CLN3-223	ENST00000566472	NEFM	P07197	916 aa		8.04	□□□□□ -1.12
CLN3-223	ENST00000566472	CALD1	Q05682	793 aa	Known RBP	8.04	□□□□□ -1.12
CLN3-223	ENST00000566472	MLEC	Q14165	292 aa		8.04	□□□□□ -1.12
CLN3-223	ENST00000566472	ZNF692	Q9BU19	519 aa	Predicted RBP	8.04	□□□□□ -1.12
CLN3-223	ENST00000566472	DIP2A	Q14689	1571 aa		8.04	□□□□□ -1.12
CLN3-223	ENST00000566472	SLIT1	O75093	1534 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	C3	P01024	1663 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	NRK	Q7Z2Y5	1582 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	ARHGAP23	Q9P227	1491 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	NEUROD2	Q15784	382 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	ZKSCAN2	Q63HK3	967 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	WAPL	Q7Z5K2	1190 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	POLK	Q9UBT6	870 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	TRIM35	Q9UPQ4	493 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	CCDC61	Q9Y6R9	512 aa		8.03	□□□□□ -1.12
CLN3-223	ENST00000566472	AKAP12	Q02952	1782 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	TOPAZ1	Q8N9V7	1692 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	BRPF1	P55201	1214 aa	Predicted RBP	8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	MVP	Q14764	893 aa	Known RBP	8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	ALDH1L2	Q3SY69	923 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	PANK1	Q8TE04	598 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	NUDT16	Q96DE0	195 aa	Known RBP	8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	RSPH6A	Q9H0K4	717 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	COG6	Q9Y2V7	657 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	PTCH1	Q13635	1447 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	KIF16B	Q96L93	1317 aa		8.02	□□□□□ -1.13
CLN3-223	ENST00000566472	ITSN1	Q15811	1721 aa		8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	PAK3	O75914	559 aa	Predicted RBP	8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	RIPK4	P57078	832 aa		8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	LMOD3	Q0VAK6	560 aa		8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	NFE2L2	Q16236	605 aa		8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	C8orf34	Q49A92	452 aa		8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	DZIP1L	Q8IYY4	767 aa	Known RBP	8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	FRAT1	Q92837	279 aa	Predicted RBP	8.01	□□□□□ -1.13
CLN3-223	ENST00000566472	ROBO2	Q9HCK4	1378 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	PLEKHG3	A1L390	1219 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	IPO8	O15397	1037 aa	Known RBP	8	□□□□□ -1.13
CLN3-223	ENST00000566472	IGHD	P01880	384 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	IL13	P35225	146 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	EXOSC9	Q06265	439 aa	Known RBP	8	□□□□□ -1.13
CLN3-223	ENST00000566472	TXNDC2	Q86VQ3	553 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	COG3	Q96JB2	828 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	RWDD1	Q9H446	243 aa	Predicted RBP	8	□□□□□ -1.13
CLN3-223	ENST00000566472	SMC4	Q9NTJ3	1288 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	DDX19B	Q9UMR2	479 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	OVOS2	A0A0J9YW53	1432 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	OVOS2	Q6IE36	1432 aa		8	□□□□□ -1.13
CLN3-223	ENST00000566472	PPM1G	O15355	546 aa	Predicted RBP	7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	PRKAR2B	P31323	418 aa		7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	NPM2	Q86SE8	214 aa	Known RBP	7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	FTSJ3	Q8IY81	847 aa	Known RBP	7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	CHMP4B	Q9H444	224 aa	Known RBP	7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	IFT57	Q9NWB7	429 aa		7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	PRR36	Q9H6K5	1346 aa		7.99	□□□□□ -1.13
CLN3-223	ENST00000566472	USP31	Q70CQ4	1352 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	USP6	P35125	1406 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	RLBP1	P12271	317 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	GNAI1	P63096	354 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	HDAC1	Q13547	482 aa	Predicted RBP	7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	ATF7IP	Q6VMQ6	1270 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	NME9	Q86XW9	330 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	TSR2	Q969E8	191 aa	Known RBP	7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	USP35	Q9P2H5	1018 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	TBX22	Q9Y458	520 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	EID1	Q9Y6B2	187 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	RIMS1	Q86UR5	1692 aa	Known RBP	7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	TTC21A	Q8NDW8	1320 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	NALCN	Q8IZF0	1738 aa		7.98	□□□□□ -1.13
CLN3-223	ENST00000566472	PIK3R4	Q99570	1358 aa		7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	SSH2	Q76I76	1423 aa		7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	ANKAR	Q7Z5J8	1434 aa		7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	VIRMA	Q69YN4	1812 aa	Known RBP	7.97	□□□□□ -1.13
CLN3-223	ENST00000566472	RGS3	P49796	1198 aa		7.97	□□□□□ -1.13

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