RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-222	ENST00000556778	NGDN	Q8NEJ9	315 aa	Known RBP	12.43	□□□□□ -0.42
PRKCH-222	ENST00000556778	LRRC59	Q96AG4	307 aa	Known RBP	12.43	□□□□□ -0.42
PRKCH-222	ENST00000556778	EIF3A	Q14152	1382 aa	Known RBP	12.43	□□□□□ -0.42
PRKCH-222	ENST00000556778	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.42	□□□□□ -0.42
PRKCH-222	ENST00000556778	NUTM2E	B1AL46	878 aa	Predicted RBP	12.42	□□□□□ -0.42
PRKCH-222	ENST00000556778	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.42	□□□□□ -0.42
PRKCH-222	ENST00000556778	FBXO3	Q9UK99	471 aa		12.42	□□□□□ -0.42
PRKCH-222	ENST00000556778	ANKAR	Q7Z5J8	1434 aa		12.42	□□□□□ -0.42
PRKCH-222	ENST00000556778	TULP4	Q9NRJ4	1543 aa		12.42	□□□□□ -0.42
PRKCH-222	ENST00000556778	ACE	P12821	1306 aa		12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	NPHP3	Q7Z494	1330 aa		12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	ATP7B	P35670	1465 aa		12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	USP32	Q8NFA0	1604 aa		12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	PLEKHG3	A1L390	1219 aa		12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	ADGRB2	O60241	1585 aa		12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	HSPA5	P11021	654 aa	Known RBP	12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	MNX1	P50219	401 aa	Predicted RBP	12.41	□□□□□ -0.42
PRKCH-222	ENST00000556778	FMN2	Q9NZ56	1722 aa		12.4	□□□□□ -0.42
PRKCH-222	ENST00000556778	LMOD2	Q6P5Q4	547 aa		12.4	□□□□□ -0.42
PRKCH-222	ENST00000556778	CABLES1	Q8TDN4	633 aa		12.4	□□□□□ -0.42
PRKCH-222	ENST00000556778	SLC12A5	Q9H2X9	1139 aa		12.4	□□□□□ -0.42
PRKCH-222	ENST00000556778	JCAD	Q9P266	1359 aa		12.4	□□□□□ -0.42
PRKCH-222	ENST00000556778	DISP3	Q9P2K9	1392 aa		12.4	□□□□□ -0.42
PRKCH-222	ENST00000556778	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.4	□□□□□ -0.42
PRKCH-222	ENST00000556778	PXDN	Q92626	1479 aa		12.4	□□□□□ -0.43
PRKCH-222	ENST00000556778	PPIP5K1	Q6PFW1	1433 aa		12.39	□□□□□ -0.43
PRKCH-222	ENST00000556778	COL16A1	Q07092	1604 aa	Predicted RBP	12.39	□□□□□ -0.43
PRKCH-222	ENST00000556778	PNPLA6	Q8IY17	1366 aa		12.39	□□□□□ -0.43
PRKCH-222	ENST00000556778	SPATA31A3	Q5VYP0	1347 aa		12.38	□□□□□ -0.43
PRKCH-222	ENST00000556778	C11orf95	C9JLR9	678 aa	Predicted RBP	12.38	□□□□□ -0.43
PRKCH-222	ENST00000556778	PAK3	O75914	559 aa	Predicted RBP	12.38	□□□□□ -0.43
PRKCH-222	ENST00000556778	NUTM2G	Q5VZR2	741 aa		12.38	□□□□□ -0.43
PRKCH-222	ENST00000556778	TMC1	Q8TDI8	760 aa		12.38	□□□□□ -0.43
PRKCH-222	ENST00000556778	HAX1	O00165	279 aa		12.37	□□□□□ -0.43
PRKCH-222	ENST00000556778	ADAMTS2	O95450	1211 aa		12.37	□□□□□ -0.43
PRKCH-222	ENST00000556778	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.37	□□□□□ -0.43
PRKCH-222	ENST00000556778	RGS17	Q9UGC6	210 aa	Predicted RBP	12.37	□□□□□ -0.43
PRKCH-222	ENST00000556778	SBNO2	Q9Y2G9	1366 aa		12.37	□□□□□ -0.43
PRKCH-222	ENST00000556778	PHLPP1	O60346	1717 aa		12.37	□□□□□ -0.43
PRKCH-222	ENST00000556778	C19orf67	A6NJJ6	358 aa		12.36	□□□□□ -0.43
PRKCH-222	ENST00000556778	QRICH2	Q9H0J4	1663 aa		12.35	□□□□□ -0.43
PRKCH-222	ENST00000556778	POLR3A	O14802	1390 aa	Predicted RBP	12.35	□□□□□ -0.43
PRKCH-222	ENST00000556778	TMF1	P82094	1093 aa		12.35	□□□□□ -0.43
PRKCH-222	ENST00000556778	LRP6	O75581	1613 aa		12.35	□□□□□ -0.43
PRKCH-222	ENST00000556778	NHSL1	Q5SYE7	1610 aa		12.34	□□□□□ -0.43
PRKCH-222	ENST00000556778	MIER1	Q8N108	512 aa		12.34	□□□□□ -0.43
PRKCH-222	ENST00000556778	POLR3GL	Q9BT43	218 aa		12.34	□□□□□ -0.43
PRKCH-222	ENST00000556778	SPATA31A6	Q5VVP1	1343 aa		12.34	□□□□□ -0.43
PRKCH-222	ENST00000556778	SBNO1	A3KN83	1393 aa		12.33	□□□□□ -0.44
PRKCH-222	ENST00000556778	VASP	P50552	380 aa	Predicted RBP	12.33	□□□□□ -0.44
PRKCH-222	ENST00000556778	EVX2	Q03828	476 aa		12.33	□□□□□ -0.44
PRKCH-222	ENST00000556778	ZRANB1	Q9UGI0	708 aa		12.33	□□□□□ -0.44
PRKCH-222	ENST00000556778	MEX3C	Q5U5Q3	659 aa	Known RBP	12.32	□□□□□ -0.44
PRKCH-222	ENST00000556778	PLCD3	Q8N3E9	789 aa		12.32	□□□□□ -0.44
PRKCH-222	ENST00000556778	ABTB2	Q8N961	1025 aa		12.32	□□□□□ -0.44
PRKCH-222	ENST00000556778	C8orf37	Q96NL8	207 aa		12.32	□□□□□ -0.44
PRKCH-222	ENST00000556778	RGPD8	O14715	1765 aa	Predicted RBP	12.32	□□□□□ -0.44
PRKCH-222	ENST00000556778	ATAD2	Q6PL18	1390 aa		12.31	□□□□□ -0.44
PRKCH-222	ENST00000556778	TNS3	Q68CZ2	1445 aa		12.31	□□□□□ -0.44
PRKCH-222	ENST00000556778	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.31	□□□□□ -0.44
PRKCH-222	ENST00000556778	PUS7	Q96PZ0	661 aa	Known RBP	12.31	□□□□□ -0.44
PRKCH-222	ENST00000556778	CD163L1	Q9NR16	1453 aa		12.31	□□□□□ -0.44
PRKCH-222	ENST00000556778	CPSF1	Q10570	1443 aa	Known RBP	12.3	□□□□□ -0.44
PRKCH-222	ENST00000556778	TTC21B	Q7Z4L5	1316 aa		12.3	□□□□□ -0.44
PRKCH-222	ENST00000556778	USP6	P35125	1406 aa		12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	SSH2	Q76I76	1423 aa		12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	POTEA	Q6S8J7	498 aa		12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	ILDR2	Q71H61	639 aa		12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	NME9	Q86XW9	330 aa		12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	NGLY1	Q96IV0	654 aa		12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	CARD14	Q9BXL6	1004 aa		12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	MED1	Q15648	1581 aa	Predicted RBP	12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	KTN1	Q86UP2	1357 aa	Known RBP	12.29	□□□□□ -0.44
PRKCH-222	ENST00000556778	FAM83G	A6ND36	823 aa		12.28	□□□□□ -0.44
PRKCH-222	ENST00000556778	NLRP6	P59044	892 aa		12.28	□□□□□ -0.44
PRKCH-222	ENST00000556778	KIF1A	Q12756	1690 aa		12.28	□□□□□ -0.44
PRKCH-222	ENST00000556778		A0A1W2PP64	1363 aa		12.28	□□□□□ -0.44
PRKCH-222	ENST00000556778	SLC24A1	O60721	1099 aa		12.27	□□□□□ -0.45
PRKCH-222	ENST00000556778	CD44	P16070	742 aa	Known RBP	12.27	□□□□□ -0.45
PRKCH-222	ENST00000556778	HAP1	P54257	671 aa	Predicted RBP	12.27	□□□□□ -0.45
PRKCH-222	ENST00000556778	ZC3H6	P61129	1189 aa	Known RBP	12.27	□□□□□ -0.45
PRKCH-222	ENST00000556778	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.27	□□□□□ -0.45
PRKCH-222	ENST00000556778	ARHGEF10	O15013	1369 aa		12.27	□□□□□ -0.45
PRKCH-222	ENST00000556778	TOPAZ1	Q8N9V7	1692 aa		12.26	□□□□□ -0.45
PRKCH-222	ENST00000556778	SOX12	O15370	315 aa		12.26	□□□□□ -0.45
PRKCH-222	ENST00000556778	TERF2IP	Q9NYB0	399 aa		12.26	□□□□□ -0.45
PRKCH-222	ENST00000556778	AFF2	P51816	1311 aa		12.26	□□□□□ -0.45
PRKCH-222	ENST00000556778	FBLN1	P23142	703 aa		12.25	□□□□□ -0.45
PRKCH-222	ENST00000556778	CHRNA2	Q15822	529 aa		12.25	□□□□□ -0.45
PRKCH-222	ENST00000556778	CDCA8	Q53HL2	280 aa		12.25	□□□□□ -0.45
PRKCH-222	ENST00000556778	KIF7	Q2M1P5	1343 aa		12.25	□□□□□ -0.45
PRKCH-222	ENST00000556778	GC	P02774	474 aa		12.24	□□□□□ -0.45
PRKCH-222	ENST00000556778	SHPRH	Q149N8	1683 aa		12.24	□□□□□ -0.45
PRKCH-222	ENST00000556778	NLRP13	Q86W25	1043 aa		12.24	□□□□□ -0.45
PRKCH-222	ENST00000556778	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.24	□□□□□ -0.45
PRKCH-222	ENST00000556778	SP7	Q8TDD2	431 aa	Predicted RBP	12.24	□□□□□ -0.45
PRKCH-222	ENST00000556778	PANK3	Q9H999	370 aa		12.24	□□□□□ -0.45
PRKCH-222	ENST00000556778	USP21	Q9UK80	565 aa		12.24	□□□□□ -0.45
PRKCH-222	ENST00000556778	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.23	□□□□□ -0.45
PRKCH-222	ENST00000556778	WASHC2A	Q641Q2	1341 aa		12.23	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms