RNA–Protein interactions for RNA: ENST00000552773.1

RFX4-210, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 1,659 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-210ENST00000552773 BACH2Q9BYV9 841 aa13.4□□□□□ -0.26
RFX4-210ENST00000552773 CHMP4BQ9H444 224 aaKnown RBP13.4□□□□□ -0.26
RFX4-210ENST00000552773 CABP1Q9NZU7 370 aa13.4□□□□□ -0.26
RFX4-210ENST00000552773 SETD1AO15047 1707 aaKnown RBP13.39□□□□□ -0.27
RFX4-210ENST00000552773 CD163L1Q9NR16 1453 aa13.39□□□□□ -0.27
RFX4-210ENST00000552773 MLECQ14165 292 aa13.39□□□□□ -0.27
RFX4-210ENST00000552773 GGNBP2Q9H3C7 697 aa13.39□□□□□ -0.27
RFX4-210ENST00000552773 CDC42BPGQ6DT37 1551 aa13.38□□□□□ -0.27
RFX4-210ENST00000552773 CPS1P31327 1500 aa13.38□□□□□ -0.27
RFX4-210ENST00000552773 AATKQ6ZMQ8 1374 aa13.38□□□□□ -0.27
RFX4-210ENST00000552773 TMEM2Q9UHN6 1383 aa13.38□□□□□ -0.27
RFX4-210ENST00000552773 U2SURPO15042 1029 aaKnown RBP13.38□□□□□ -0.27
RFX4-210ENST00000552773 LMOD3Q0VAK6 560 aa13.38□□□□□ -0.27
RFX4-210ENST00000552773 CCDC61Q9Y6R9 512 aa13.38□□□□□ -0.27
RFX4-210ENST00000552773 RARSP54136 660 aaKnown RBP13.37□□□□□ -0.27
RFX4-210ENST00000552773 EID1Q9Y6B2 187 aa13.37□□□□□ -0.27
RFX4-210ENST00000552773 COL3A1P02461 1466 aaPredicted RBP13.37□□□□□ -0.27
RFX4-210ENST00000552773 IPO8O15397 1037 aaKnown RBP13.37□□□□□ -0.27
RFX4-210ENST00000552773 NEUROD2Q15784 382 aa13.37□□□□□ -0.27
RFX4-210ENST00000552773 CLUAP1Q96AJ1 413 aa13.37□□□□□ -0.27
RFX4-210ENST00000552773 CPSF1Q10570 1443 aaKnown RBP13.36□□□□□ -0.27
RFX4-210ENST00000552773 PLEKHG1Q9ULL1 1385 aa13.36□□□□□ -0.27
RFX4-210ENST00000552773 TMPOP42166 694 aaKnown RBP13.36□□□□□ -0.27
RFX4-210ENST00000552773 HAP1P54257 671 aaPredicted RBP13.36□□□□□ -0.27
RFX4-210ENST00000552773 C20orf194Q5TEA3 1177 aa13.36□□□□□ -0.27
RFX4-210ENST00000552773 SPINK5Q9NQ38 1064 aaPredicted RBP13.36□□□□□ -0.27
RFX4-210ENST00000552773 PPIP5K1Q6PFW1 1433 aa13.36□□□□□ -0.27
RFX4-210ENST00000552773 MSH5O43196 834 aa13.35□□□□□ -0.27
RFX4-210ENST00000552773 BCAR3O75815 825 aa13.35□□□□□ -0.27
RFX4-210ENST00000552773 FAM161AQ3B820 660 aa13.35□□□□□ -0.27
RFX4-210ENST00000552773 PLEKHF1Q96S99 279 aa13.35□□□□□ -0.27
RFX4-210ENST00000552773 ZKSCAN2Q63HK3 967 aa13.34□□□□□ -0.27
RFX4-210ENST00000552773 COG3Q96JB2 828 aa13.34□□□□□ -0.27
RFX4-210ENST00000552773 KIF16BQ96L93 1317 aa13.34□□□□□ -0.27
RFX4-210ENST00000552773 CDK12Q9NYV4 1490 aaPredicted RBP13.34□□□□□ -0.27
RFX4-210ENST00000552773 NRXN3Q9Y4C0 1643 aa13.34□□□□□ -0.27
RFX4-210ENST00000552773 RWDD1Q9H446 243 aaPredicted RBP13.34□□□□□ -0.27
RFX4-210ENST00000552773 UBR1Q8IWV7 1749 aa13.33□□□□□ -0.28
RFX4-210ENST00000552773 FTSJ3Q8IY81 847 aaKnown RBP13.33□□□□□ -0.28
RFX4-210ENST00000552773 NUDT16Q96DE0 195 aaKnown RBP13.33□□□□□ -0.28
RFX4-210ENST00000552773 DAXXQ9UER7 740 aaPredicted RBP13.33□□□□□ -0.28
RFX4-210ENST00000552773 RRP7AQ9Y3A4 280 aaKnown RBP13.33□□□□□ -0.28
RFX4-210ENST00000552773 RIPK4P57078 832 aa13.32□□□□□ -0.28
RFX4-210ENST00000552773 ALDH1L2Q3SY69 923 aa13.32□□□□□ -0.28
RFX4-210ENST00000552773 WAPLQ7Z5K2 1190 aa13.32□□□□□ -0.28
RFX4-210ENST00000552773 FRAT1Q92837 279 aaPredicted RBP13.32□□□□□ -0.28
RFX4-210ENST00000552773 METP08581 1390 aa13.31□□□□□ -0.28
RFX4-210ENST00000552773 DIP2AQ14689 1571 aa13.31□□□□□ -0.28
RFX4-210ENST00000552773 KCNA4P22459 653 aa13.31□□□□□ -0.28
RFX4-210ENST00000552773 DDX19BQ9UMR2 479 aa13.31□□□□□ -0.28
RFX4-210ENST00000552773 DZIP1LQ8IYY4 767 aaKnown RBP13.3□□□□□ -0.28
RFX4-210ENST00000552773 POLKQ9UBT6 870 aa13.3□□□□□ -0.28
RFX4-210ENST00000552773 ITSN1Q15811 1721 aa13.29□□□□□ -0.28
RFX4-210ENST00000552773 TXNDC2Q86VQ3 553 aa13.29□□□□□ -0.28
RFX4-210ENST00000552773 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.29□□□□□ -0.28
RFX4-210ENST00000552773 THEMISQ8N1K5 641 aaPredicted RBP13.29□□□□□ -0.28
RFX4-210ENST00000552773 DMRT2Q9Y5R5 561 aa13.29□□□□□ -0.28
RFX4-210ENST00000552773 MON2Q7Z3U7 1717 aa13.29□□□□□ -0.28
RFX4-210ENST00000552773 BRPF1P55201 1214 aaPredicted RBP13.28□□□□□ -0.28
RFX4-210ENST00000552773 GNAI1P63096 354 aa13.28□□□□□ -0.28
RFX4-210ENST00000552773 MVPQ14764 893 aaKnown RBP13.28□□□□□ -0.28
RFX4-210ENST00000552773 NFE2L2Q16236 605 aa13.28□□□□□ -0.28
RFX4-210ENST00000552773 SMC4Q9NTJ3 1288 aa13.28□□□□□ -0.28
RFX4-210ENST00000552773 COG6Q9Y2V7 657 aa13.28□□□□□ -0.28
RFX4-210ENST00000552773 TBX22Q9Y458 520 aa13.28□□□□□ -0.28
RFX4-210ENST00000552773 SLIT1O75093 1534 aa13.28□□□□□ -0.28
RFX4-210ENST00000552773 PLEKHG3A1L390 1219 aa13.28□□□□□ -0.28
RFX4-210ENST00000552773 PPM1GO15355 546 aaPredicted RBP13.28□□□□□ -0.28
RFX4-210ENST00000552773 RTL5Q5HYW3 569 aaPredicted RBP13.27□□□□□ -0.29
RFX4-210ENST00000552773 RSPH6AQ9H0K4 717 aa13.27□□□□□ -0.29
RFX4-210ENST00000552773 UPF2Q9HAU5 1272 aaKnown RBP13.27□□□□□ -0.29
RFX4-210ENST00000552773 TRIM35Q9UPQ4 493 aa13.27□□□□□ -0.29
RFX4-210ENST00000552773 TTC21AQ8NDW8 1320 aa13.27□□□□□ -0.29
RFX4-210ENST00000552773 AKAP12Q02952 1782 aa13.26□□□□□ -0.29
RFX4-210ENST00000552773 PTCH1Q13635 1447 aa13.26□□□□□ -0.29
RFX4-210ENST00000552773 EIF5BO60841 1220 aaKnown RBP13.26□□□□□ -0.29
RFX4-210ENST00000552773 IFT57Q9NWB7 429 aa13.26□□□□□ -0.29
RFX4-210ENST00000552773 USP35Q9P2H5 1018 aa13.26□□□□□ -0.29
RFX4-210ENST00000552773 PIK3R4Q99570 1358 aa13.26□□□□□ -0.29
RFX4-210ENST00000552773 ADAMTS13Q76LX8 1427 aa13.25□□□□□ -0.29
RFX4-210ENST00000552773 PRKAR2BP31323 418 aa13.25□□□□□ -0.29
RFX4-210ENST00000552773 EXOSC9Q06265 439 aaKnown RBP13.25□□□□□ -0.29
RFX4-210ENST00000552773 ATF7IPQ6VMQ6 1270 aa13.25□□□□□ -0.29
RFX4-210ENST00000552773 PANK1Q8TE04 598 aa13.25□□□□□ -0.29
RFX4-210ENST00000552773 ARHGAP45Q92619 1136 aa13.25□□□□□ -0.29
RFX4-210ENST00000552773 ARHGAP23Q9P227 1491 aa13.25□□□□□ -0.29
RFX4-210ENST00000552773 NPM2Q86SE8 214 aaKnown RBP13.24□□□□□ -0.29
RFX4-210ENST00000552773 TTC21BQ7Z4L5 1316 aa13.24□□□□□ -0.29
RFX4-210ENST00000552773 LRRC7Q96NW7 1537 aa13.24□□□□□ -0.29
RFX4-210ENST00000552773 IL13P35225 146 aa13.24□□□□□ -0.29
RFX4-210ENST00000552773 C3P01024 1663 aa13.23□□□□□ -0.29
RFX4-210ENST00000552773 MAP2P11137 1827 aaKnown RBP13.23□□□□□ -0.29
RFX4-210ENST00000552773 HDAC1Q13547 482 aaPredicted RBP13.22□□□□□ -0.29
RFX4-210ENST00000552773 RGS3P49796 1198 aa13.21□□□□□ -0.29
RFX4-210ENST00000552773 NME9Q86XW9 330 aa13.21□□□□□ -0.29
RFX4-210ENST00000552773 ROBO2Q9HCK4 1378 aa13.21□□□□□ -0.29
RFX4-210ENST00000552773 KIF24Q5T7B8 1368 aa13.21□□□□□ -0.3
RFX4-210ENST00000552773 ANKARQ7Z5J8 1434 aa13.21□□□□□ -0.3
RFX4-210ENST00000552773 TOPAZ1Q8N9V7 1692 aa13.2□□□□□ -0.3
RFX4-210ENST00000552773 USP6P35125 1406 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms