RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 PDZRN3Q9UPQ7 1066 aa15.38■□□□□ 0.05
PTCH1-212ENST00000546744 CD109Q6YHK3 1445 aa15.38■□□□□ 0.05
PTCH1-212ENST00000546744 ERLIN1O75477 346 aa15.38■□□□□ 0.05
PTCH1-212ENST00000546744 TRHP20396 242 aaPredicted RBP15.38■□□□□ 0.05
PTCH1-212ENST00000546744 GNAI1P63096 354 aa15.38■□□□□ 0.05
PTCH1-212ENST00000546744 PRIMPOLQ96LW4 560 aa15.38■□□□□ 0.05
PTCH1-212ENST00000546744 CEP89Q96ST8 783 aa15.38■□□□□ 0.05
PTCH1-212ENST00000546744 BCL2L13Q9BXK5 485 aa15.38■□□□□ 0.05
PTCH1-212ENST00000546744 DHX29Q7Z478 1369 aaKnown RBP15.37■□□□□ 0.05
PTCH1-212ENST00000546744 LNPKQ9C0E8 428 aa15.37■□□□□ 0.05
PTCH1-212ENST00000546744 ABCC10Q5T3U5 1492 aa15.37■□□□□ 0.05
PTCH1-212ENST00000546744 SLC4A10Q6U841 1118 aa15.37■□□□□ 0.05
PTCH1-212ENST00000546744 RNF214Q8ND24 703 aa15.37■□□□□ 0.05
PTCH1-212ENST00000546744 CCDC47Q96A33 483 aaKnown RBP15.37■□□□□ 0.05
PTCH1-212ENST00000546744 SYCP2Q9BX26 1530 aa15.37■□□□□ 0.05
PTCH1-212ENST00000546744 KIAA1107Q9UPP5 1409 aa15.37■□□□□ 0.05
PTCH1-212ENST00000546744 CLASP1Q7Z460 1538 aa15.37■□□□□ 0.05
PTCH1-212ENST00000546744 FANCAO15360 1455 aa15.36■□□□□ 0.05
PTCH1-212ENST00000546744 ZNF428Q96B54 188 aa15.36■□□□□ 0.05
PTCH1-212ENST00000546744 UHRF1BP1LA0JNW5 1464 aa15.36■□□□□ 0.05
PTCH1-212ENST00000546744 PRPF40AO75400 957 aaKnown RBP15.36■□□□□ 0.05
PTCH1-212ENST00000546744 AEBP1Q8IUX7 1158 aa15.36■□□□□ 0.05
PTCH1-212ENST00000546744 ERC2O15083 957 aa15.36■□□□□ 0.05
PTCH1-212ENST00000546744 PSMA5P28066 241 aa15.36■□□□□ 0.05
PTCH1-212ENST00000546744 ADGRL1O94910 1474 aa15.35■□□□□ 0.05
PTCH1-212ENST00000546744 EVC2Q86UK5 1308 aa15.35■□□□□ 0.05
PTCH1-212ENST00000546744 VPS37CA5D8V6 355 aaPredicted RBP15.35■□□□□ 0.05
PTCH1-212ENST00000546744 MLECQ14165 292 aa15.34■□□□□ 0.05
PTCH1-212ENST00000546744 PLPPR3Q6T4P5 718 aa15.34■□□□□ 0.05
PTCH1-212ENST00000546744 FAM107BQ9H098 131 aa15.34■□□□□ 0.05
PTCH1-212ENST00000546744 KDM5BQ9UGL1 1544 aa15.34■□□□□ 0.05
PTCH1-212ENST00000546744 GORABQ5T7V8 394 aa15.34■□□□□ 0.05
PTCH1-212ENST00000546744 RASSF8Q8NHQ8 419 aa15.34■□□□□ 0.05
PTCH1-212ENST00000546744 TAOK2Q9UL54 1235 aa15.34■□□□□ 0.05
PTCH1-212ENST00000546744 TRIM29Q14134 588 aa15.33■□□□□ 0.04
PTCH1-212ENST00000546744 HS1BP3Q53T59 392 aa15.33■□□□□ 0.04
PTCH1-212ENST00000546744 RRP7AQ9Y3A4 280 aaKnown RBP15.33■□□□□ 0.04
PTCH1-212ENST00000546744 CGNQ9P2M7 1197 aaKnown RBP15.33■□□□□ 0.04
PTCH1-212ENST00000546744 PANK1Q8TE04 598 aa15.32■□□□□ 0.04
PTCH1-212ENST00000546744 SHROOM2Q13796 1616 aa15.32■□□□□ 0.04
PTCH1-212ENST00000546744 WDR63Q8IWG1 891 aa15.32■□□□□ 0.04
PTCH1-212ENST00000546744 KINO60870 393 aaKnown RBP15.31■□□□□ 0.04
PTCH1-212ENST00000546744 RAPGEF3O95398 923 aa15.31■□□□□ 0.04
PTCH1-212ENST00000546744 OLFM4Q6UX06 510 aa15.31■□□□□ 0.04
PTCH1-212ENST00000546744 ANKRD30BQ9BXX2 1392 aa15.31■□□□□ 0.04
PTCH1-212ENST00000546744 SHANK2Q9UPX8 1470 aa15.31■□□□□ 0.04
PTCH1-212ENST00000546744 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.31■□□□□ 0.04
PTCH1-212ENST00000546744 GBP3Q9H0R5 595 aa15.31■□□□□ 0.04
PTCH1-212ENST00000546744 ADAMTS8Q9UP79 889 aa15.31■□□□□ 0.04
PTCH1-212ENST00000546744 PIP4K2AP48426 406 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-212ENST00000546744 SYNE3Q6ZMZ3 975 aa15.3■□□□□ 0.04
PTCH1-212ENST00000546744 DIAPH1O60610 1272 aaKnown RBP15.3■□□□□ 0.04
PTCH1-212ENST00000546744 NEMFO60524 1076 aa15.3■□□□□ 0.04
PTCH1-212ENST00000546744 SENP3Q9H4L4 574 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-212ENST00000546744 HIP1O00291 1037 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 KIAA0754O94854 1291 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 FOXD4L6Q3SYB3 417 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-212ENST00000546744 FOXD4L3Q6VB84 417 aaPredicted RBP15.29■□□□□ 0.04
PTCH1-212ENST00000546744 SDF4Q9BRK5 362 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 MYO6Q9UM54 1294 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 ZCCHC11Q5TAX3 1644 aaKnown RBP15.29■□□□□ 0.04
PTCH1-212ENST00000546744 PLEKHH1Q9ULM0 1364 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 RRP12Q5JTH9 1297 aaKnown RBP15.29■□□□□ 0.04
PTCH1-212ENST00000546744 GTPBP4Q9BZE4 634 aaKnown RBP15.29■□□□□ 0.04
PTCH1-212ENST00000546744 CPLX1O14810 134 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 NEK4P51957 841 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 SMARCE1Q969G3 411 aa15.29■□□□□ 0.04
PTCH1-212ENST00000546744 ADCY10Q96PN6 1610 aa15.28■□□□□ 0.04
PTCH1-212ENST00000546744 TRAPPC8Q9Y2L5 1435 aa15.28■□□□□ 0.04
PTCH1-212ENST00000546744 AKAP17AQ02040 695 aaKnown RBP15.28■□□□□ 0.04
PTCH1-212ENST00000546744 KRT85P78386 507 aa15.27■□□□□ 0.04
PTCH1-212ENST00000546744 UVSSAQ2YD98 709 aa15.27■□□□□ 0.04
PTCH1-212ENST00000546744 CDCA7LQ96GN5 454 aa15.27■□□□□ 0.04
PTCH1-212ENST00000546744 ADGRL2O95490 1459 aa15.27■□□□□ 0.04
PTCH1-212ENST00000546744 RIPK4P57078 832 aa15.27■□□□□ 0.04
PTCH1-212ENST00000546744 TERF1P54274 439 aa15.27■□□□□ 0.03
PTCH1-212ENST00000546744 ANKRD1Q15327 319 aa15.27■□□□□ 0.03
PTCH1-212ENST00000546744 TTC37Q6PGP7 1564 aa15.27■□□□□ 0.03
PTCH1-212ENST00000546744 ZNF396Q96N95 335 aaPredicted RBP15.27■□□□□ 0.03
PTCH1-212ENST00000546744 CBFA2T2O43439 604 aa15.26■□□□□ 0.03
PTCH1-212ENST00000546744 GNAI3P08754 354 aa15.26■□□□□ 0.03
PTCH1-212ENST00000546744 GCC2Q8IWJ2 1684 aa15.26■□□□□ 0.03
PTCH1-212ENST00000546744 GOLGA6L7A0A1B0GV03 622 aa15.26■□□□□ 0.03
PTCH1-212ENST00000546744 PES1O00541 588 aaKnown RBP15.26■□□□□ 0.03
PTCH1-212ENST00000546744 IFIT2P09913 472 aaKnown RBP15.26■□□□□ 0.03
PTCH1-212ENST00000546744 MYO5CQ9NQX4 1742 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 MVPQ14764 893 aaKnown RBP15.25■□□□□ 0.03
PTCH1-212ENST00000546744 NBPF1Q3BBV0 1214 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 TMCO3Q6UWJ1 677 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 FILIP1Q7Z7B0 1213 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 WWC1Q8IX03 1113 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 TXLNBQ8N3L3 684 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 UBXN4Q92575 508 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 CAVIN2O95810 425 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 PPP2R1AP30153 589 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 SAFBQ15424 915 aaKnown RBP eCLIP15.25■□□□□ 0.03
PTCH1-212ENST00000546744 FILIP1LQ4L180 1135 aa15.25■□□□□ 0.03
PTCH1-212ENST00000546744 CNTROBQ8N137 903 aa15.24■□□□□ 0.03
PTCH1-212ENST00000546744 CDC42BPAQ5VT25 1732 aa15.24■□□□□ 0.03
PTCH1-212ENST00000546744 ZSCAN31Q96LW9 406 aaPredicted RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 137.1 ms