RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PAK3O75914 559 aaPredicted RBP23.6■■□□□ 1.37
LIG1-204ENST00000542460 PHLPP1O60346 1717 aa23.59■■□□□ 1.37
LIG1-204ENST00000542460 SPATA31A3Q5VYP0 1347 aa23.59■■□□□ 1.37
LIG1-204ENST00000542460 EDC4Q6P2E9 1401 aaKnown RBP23.59■■□□□ 1.37
LIG1-204ENST00000542460 SSH2Q76I76 1423 aa23.59■■□□□ 1.37
LIG1-204ENST00000542460 TTC21BQ7Z4L5 1316 aa23.58■■□□□ 1.37
LIG1-204ENST00000542460 AKAP12Q02952 1782 aa23.58■■□□□ 1.36
LIG1-204ENST00000542460 CARD14Q9BXL6 1004 aa23.58■■□□□ 1.36
LIG1-204ENST00000542460 COL16A1Q07092 1604 aaPredicted RBP23.57■■□□□ 1.36
LIG1-204ENST00000542460 TTC21AQ8NDW8 1320 aa23.56■■□□□ 1.36
LIG1-204ENST00000542460 SOCS7O14512 581 aa23.56■■□□□ 1.36
LIG1-204ENST00000542460 TNS3Q68CZ2 1445 aa23.56■■□□□ 1.36
LIG1-204ENST00000542460 LMOD2Q6P5Q4 547 aa23.55■■□□□ 1.36
LIG1-204ENST00000542460 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.55■■□□□ 1.36
LIG1-204ENST00000542460 MON2Q7Z3U7 1717 aa23.54■■□□□ 1.36
LIG1-204ENST00000542460 ABTB2Q8N961 1025 aa23.54■■□□□ 1.36
LIG1-204ENST00000542460 ARHGEF10O15013 1369 aa23.54■■□□□ 1.36
LIG1-204ENST00000542460 NSD3Q9BZ95 1437 aa23.53■■□□□ 1.36
LIG1-204ENST00000542460 TRPM3Q9HCF6 1732 aaPredicted RBP23.53■■□□□ 1.36
LIG1-204ENST00000542460 DDX10Q13206 875 aaKnown RBP23.52■■□□□ 1.36
LIG1-204ENST00000542460 KNSTRNQ9Y448 316 aa23.52■■□□□ 1.36
LIG1-204ENST00000542460 JCADQ9P266 1359 aa23.51■■□□□ 1.35
LIG1-204ENST00000542460 NRKQ7Z2Y5 1582 aa23.51■■□□□ 1.35
LIG1-204ENST00000542460 PER1O15534 1290 aaPredicted RBP23.5■■□□□ 1.35
LIG1-204ENST00000542460 CGNL1Q0VF96 1302 aa23.49■■□□□ 1.35
LIG1-204ENST00000542460 PNPLA6Q8IY17 1366 aa23.49■■□□□ 1.35
LIG1-204ENST00000542460 NLRP6P59044 892 aa23.49■■□□□ 1.35
LIG1-204ENST00000542460 NLRP13Q86W25 1043 aa23.49■■□□□ 1.35
LIG1-204ENST00000542460 NME9Q86XW9 330 aa23.49■■□□□ 1.35
LIG1-204ENST00000542460 FYB1O15117 783 aa23.48■■□□□ 1.35
LIG1-204ENST00000542460 NUTM2GQ5VZR2 741 aa23.48■■□□□ 1.35
LIG1-204ENST00000542460 ALS2Q96Q42 1657 aa23.47■■□□□ 1.35
LIG1-204ENST00000542460 USP31Q70CQ4 1352 aa23.45■■□□□ 1.34
LIG1-204ENST00000542460 GGNBP2Q9H3C7 697 aa23.43■■□□□ 1.34
LIG1-204ENST00000542460 ZRANB1Q9UGI0 708 aa23.43■■□□□ 1.34
LIG1-204ENST00000542460 COG3Q96JB2 828 aa23.43■■□□□ 1.34
LIG1-204ENST00000542460 PIK3C2AO00443 1686 aa23.43■■□□□ 1.34
LIG1-204ENST00000542460 SPATA31A6Q5VVP1 1343 aa23.42■■□□□ 1.34
LIG1-204ENST00000542460 AMER1Q5JTC6 1135 aaPredicted RBP23.42■■□□□ 1.34
LIG1-204ENST00000542460 CABLES1Q8TDN4 633 aa23.42■■□□□ 1.34
LIG1-204ENST00000542460 SHPRHQ149N8 1683 aa23.41■■□□□ 1.34
LIG1-204ENST00000542460 USP19O94966 1318 aa23.41■■□□□ 1.34
LIG1-204ENST00000542460 PLEKHG5O94827 1062 aa23.41■■□□□ 1.34
LIG1-204ENST00000542460 COL22A1Q8NFW1 1626 aaPredicted RBP23.41■■□□□ 1.34
LIG1-204ENST00000542460 NSD2O96028 1365 aa23.41■■□□□ 1.34
LIG1-204ENST00000542460 HAP1P54257 671 aaPredicted RBP23.39■■□□□ 1.34
LIG1-204ENST00000542460 OVOS2A0A0J9YW53 1432 aa23.39■■□□□ 1.34
LIG1-204ENST00000542460 OVOS2Q6IE36 1432 aa23.39■■□□□ 1.34
LIG1-204ENST00000542460 RGS17Q9UGC6 210 aaPredicted RBP23.38■■□□□ 1.33
LIG1-204ENST00000542460 NPC1L1Q9UHC9 1359 aa23.38■■□□□ 1.33
LIG1-204ENST00000542460 GCP02774 474 aa23.38■■□□□ 1.33
LIG1-204ENST00000542460 KCNH5Q8NCM2 988 aa23.38■■□□□ 1.33
LIG1-204ENST00000542460 NUTM2BA6NNL0 878 aaPredicted RBP23.37■■□□□ 1.33
LIG1-204ENST00000542460 NUTM2EB1AL46 878 aaPredicted RBP23.37■■□□□ 1.33
LIG1-204ENST00000542460 NUTM2AQ8IVF1 878 aaPredicted RBP23.37■■□□□ 1.33
LIG1-204ENST00000542460 CC2D1BQ5T0F9 858 aaKnown RBP23.35■■□□□ 1.33
LIG1-204ENST00000542460 KIF20BQ96Q89 1820 aa23.34■■□□□ 1.33
LIG1-204ENST00000542460 SLIT3O75094 1523 aa23.34■■□□□ 1.33
LIG1-204ENST00000542460 USP54Q70EL1 1684 aa23.34■■□□□ 1.33
LIG1-204ENST00000542460 MORC1Q86VD1 984 aa23.33■■□□□ 1.33
LIG1-204ENST00000542460 LRP6O75581 1613 aa23.32■■□□□ 1.32
LIG1-204ENST00000542460 SOX12O15370 315 aa23.32■■□□□ 1.32
LIG1-204ENST00000542460 CNGB1Q14028 1251 aaPredicted RBP23.31■■□□□ 1.32
LIG1-204ENST00000542460 MARF1Q9Y4F3 1742 aaKnown RBP23.3■■□□□ 1.32
LIG1-204ENST00000542460 CRYBG1Q9Y4K1 1723 aa23.3■■□□□ 1.32
LIG1-204ENST00000542460 ADAMTS2O95450 1211 aa23.3■■□□□ 1.32
LIG1-204ENST00000542460 ZC3H6P61129 1189 aaKnown RBP23.3■■□□□ 1.32
LIG1-204ENST00000542460 PHRF1Q9P1Y6 1649 aaKnown RBP23.29■■□□□ 1.32
LIG1-204ENST00000542460 MEX3CQ5U5Q3 659 aaKnown RBP23.29■■□□□ 1.32
LIG1-204ENST00000542460 CPDO75976 1380 aa23.28■■□□□ 1.32
LIG1-204ENST00000542460 POTEAQ6S8J7 498 aa23.28■■□□□ 1.32
LIG1-204ENST00000542460 ABCA3Q99758 1704 aa23.27■■□□□ 1.32
LIG1-204ENST00000542460 FBLN1P23142 703 aa23.27■■□□□ 1.32
LIG1-204ENST00000542460 TNNT2P45379 298 aaPredicted RBP23.27■■□□□ 1.32
LIG1-204ENST00000542460 ARHGEF25Q86VW2 580 aa23.27■■□□□ 1.32
LIG1-204ENST00000542460 KIAA0232Q92628 1395 aa23.27■■□□□ 1.31
LIG1-204ENST00000542460 NFAT5O94916 1531 aa23.26■■□□□ 1.31
LIG1-204ENST00000542460 PRDM11Q9NQV5 511 aa23.26■■□□□ 1.31
LIG1-204ENST00000542460 AATKQ6ZMQ8 1374 aa23.26■■□□□ 1.31
LIG1-204ENST00000542460 ANKRD26Q9UPS8 1709 aa23.25■■□□□ 1.31
LIG1-204ENST00000542460 FAM83GA6ND36 823 aa23.24■■□□□ 1.31
LIG1-204ENST00000542460 ZBTB7CA1YPR0 619 aa23.23■■□□□ 1.31
LIG1-204ENST00000542460 RRS1Q15050 365 aaKnown RBP23.23■■□□□ 1.31
LIG1-204ENST00000542460 C8orf37Q96NL8 207 aa23.23■■□□□ 1.31
LIG1-204ENST00000542460 MAP3K19Q56UN5 1328 aa23.22■■□□□ 1.31
LIG1-204ENST00000542460 RALBP1Q15311 655 aa23.22■■□□□ 1.31
LIG1-204ENST00000542460 CHRNA2Q15822 529 aa23.22■■□□□ 1.31
LIG1-204ENST00000542460 NGLY1Q96IV0 654 aa23.22■■□□□ 1.31
LIG1-204ENST00000542460 PARD3Q8TEW0 1356 aa23.21■■□□□ 1.31
LIG1-204ENST00000542460 POLKQ9UBT6 870 aa23.21■■□□□ 1.31
LIG1-204ENST00000542460 AMPHP49418 695 aa23.19■■□□□ 1.3
LIG1-204ENST00000542460 EMILIN1Q9Y6C2 1016 aa23.19■■□□□ 1.3
LIG1-204ENST00000542460 PRKRIP1Q9H875 184 aaPredicted RBP23.18■■□□□ 1.3
LIG1-204ENST00000542460 KIF24Q5T7B8 1368 aa23.18■■□□□ 1.3
LIG1-204ENST00000542460 IP6K1Q92551 441 aa23.18■■□□□ 1.3
LIG1-204ENST00000542460 PPM1GO15355 546 aaPredicted RBP23.17■■□□□ 1.3
LIG1-204ENST00000542460 FNBP4Q8N3X1 1017 aaPredicted RBP23.17■■□□□ 1.3
LIG1-204ENST00000542460 BTG4Q9NY30 223 aa23.17■■□□□ 1.3
LIG1-204ENST00000542460 ANP32CO43423 234 aa23.16■■□□□ 1.3
LIG1-204ENST00000542460 PPP2R1AP30153 589 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms