RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 HOMER1Q86YM7 354 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 RNF123Q5XPI4 1314 aa9.36□□□□□ -0.91
CLCN3-209ENST00000513761 PARD3Q8TEW0 1356 aa9.36□□□□□ -0.91
CLCN3-209ENST00000513761 CHMP4AQ9BY43 222 aa9.36□□□□□ -0.91
CLCN3-209ENST00000513761 RRAGDQ9NQL2 400 aaPredicted RBP9.36□□□□□ -0.91
CLCN3-209ENST00000513761 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.36□□□□□ -0.91
CLCN3-209ENST00000513761 MCM2P49736 904 aa9.36□□□□□ -0.91
CLCN3-209ENST00000513761 PLEKHH1Q9ULM0 1364 aa9.36□□□□□ -0.91
CLCN3-209ENST00000513761 TPD52L1Q16890 204 aaPredicted RBP9.36□□□□□ -0.91
CLCN3-209ENST00000513761 ARHGEF11O15085 1522 aa9.36□□□□□ -0.91
CLCN3-209ENST00000513761 GPRASP1Q5JY77 1395 aa9.35□□□□□ -0.91
CLCN3-209ENST00000513761 MAP4K4O95819 1239 aaPredicted RBP9.35□□□□□ -0.91
CLCN3-209ENST00000513761 SURF6O75683 361 aaKnown RBP9.35□□□□□ -0.91
CLCN3-209ENST00000513761 SLC4A2P04920 1241 aa9.35□□□□□ -0.91
CLCN3-209ENST00000513761 NPHP1O15259 732 aa9.35□□□□□ -0.91
CLCN3-209ENST00000513761 UBTFL1P0CB47 393 aaPredicted RBP9.35□□□□□ -0.91
CLCN3-209ENST00000513761 PRAM1Q96QH2 718 aa9.35□□□□□ -0.91
CLCN3-209ENST00000513761 SYNJ2O15056 1496 aa9.35□□□□□ -0.91
CLCN3-209ENST00000513761 SMARCA5O60264 1052 aaPredicted RBP9.35□□□□□ -0.91
CLCN3-209ENST00000513761 PEG3Q9GZU2 1588 aa9.34□□□□□ -0.91
CLCN3-209ENST00000513761 PDCL3Q9H2J4 239 aa9.34□□□□□ -0.91
CLCN3-209ENST00000513761 CABP1Q9NZU7 370 aa9.34□□□□□ -0.91
CLCN3-209ENST00000513761 GOLGA6L1Q8N7Z2 621 aa9.34□□□□□ -0.91
CLCN3-209ENST00000513761 RBM27Q9P2N5 1060 aaKnown RBP9.34□□□□□ -0.91
CLCN3-209ENST00000513761 TBC1D9Q6ZT07 1266 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 SPINK5Q9NQ38 1064 aaPredicted RBP9.33□□□□□ -0.92
CLCN3-209ENST00000513761 LETM1O95202 739 aaPredicted RBP9.33□□□□□ -0.92
CLCN3-209ENST00000513761 TEFQ10587 303 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 PLB1Q6P1J6 1458 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 RALGAPBQ86X10 1494 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 THOC2Q8NI27 1593 aaKnown RBP9.33□□□□□ -0.92
CLCN3-209ENST00000513761 BAG4O95429 457 aaKnown RBP9.33□□□□□ -0.92
CLCN3-209ENST00000513761 RLBP1P12271 317 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 RNF20Q5VTR2 975 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 WDR33Q9C0J8 1336 aaKnown RBP9.33□□□□□ -0.92
CLCN3-209ENST00000513761 UGGT2Q9NYU1 1516 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 IQGAP2Q13576 1575 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 CSB-PGBD3P0DP91 1061 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 UPF3BQ9BZI7 483 aaKnown RBP9.33□□□□□ -0.92
CLCN3-209ENST00000513761 GNAI2P04899 355 aa9.33□□□□□ -0.92
CLCN3-209ENST00000513761 CNTROBQ8N137 903 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 CCDC73Q6ZRK6 1079 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 CUL7Q14999 1698 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 CEBPZQ03701 1054 aaKnown RBP9.32□□□□□ -0.92
CLCN3-209ENST00000513761 TAF7LQ5H9L4 462 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 TOMM22Q9NS69 142 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 KDM2BQ8NHM5 1336 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 TPM3P06753 285 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 GNAI3P08754 354 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 CBX1P83916 185 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 G3BP1Q13283 466 aaKnown RBP eCLIP9.32□□□□□ -0.92
CLCN3-209ENST00000513761 SULT6B1Q6IMI4 303 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 RBM42Q9BTD8 480 aaKnown RBP9.32□□□□□ -0.92
CLCN3-209ENST00000513761 GDPD2Q9HCC8 539 aa9.32□□□□□ -0.92
CLCN3-209ENST00000513761 LRRCC1Q9C099 1032 aa9.31□□□□□ -0.92
CLCN3-209ENST00000513761 EXOC6BQ9Y2D4 811 aa9.31□□□□□ -0.92
CLCN3-209ENST00000513761 PER1O15534 1290 aaPredicted RBP9.31□□□□□ -0.92
CLCN3-209ENST00000513761 DCTN1Q14203 1278 aa9.31□□□□□ -0.92
CLCN3-209ENST00000513761 CCDC192P0DO97 292 aa9.31□□□□□ -0.92
CLCN3-209ENST00000513761 IL1RAPL2Q9NP60 686 aa9.31□□□□□ -0.92
CLCN3-209ENST00000513761 ZNF428Q96B54 188 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 CDK19Q9BWU1 502 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 BMP2KLQ5H9B9 411 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 MNS1Q8NEH6 495 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 SNAPC4Q5SXM2 1469 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 ADGRF5Q8IZF2 1346 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 PES1O00541 588 aaKnown RBP9.3□□□□□ -0.92
CLCN3-209ENST00000513761 KLHL40Q2TBA0 621 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 FMNL2Q96PY5 1086 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 RRS1Q15050 365 aaKnown RBP9.3□□□□□ -0.92
CLCN3-209ENST00000513761 TEX35Q5T0J7 233 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 TESK2Q96S53 571 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 SDF4Q9BRK5 362 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 USP25Q9UHP3 1055 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 CCDC141Q6ZP82 1450 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 FCHSD2O94868 740 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 STK3Q13188 491 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 ZSCAN23Q3MJ62 389 aa9.3□□□□□ -0.92
CLCN3-209ENST00000513761 HSP90AB4PQ58FF6 505 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 NUTM2GQ5VZR2 741 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 CLASRPQ8N2M8 674 aaKnown RBP9.29□□□□□ -0.92
CLCN3-209ENST00000513761 CCDC34Q96HJ3 373 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 NFE2L2Q16236 605 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 CPLX1O14810 134 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 AIMP1Q12904 312 aaKnown RBP9.29□□□□□ -0.92
CLCN3-209ENST00000513761 PDCL2Q8N4E4 241 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 FSD1Q9BTV5 496 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 TNMDQ9H2S6 317 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 ZHX1Q9UKY1 873 aaPredicted RBP9.29□□□□□ -0.92
CLCN3-209ENST00000513761 CFAP43Q8NDM7 1665 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 KIAA0586Q9BVV6 1533 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 MAGI1Q96QZ7 1491 aaPredicted RBP9.29□□□□□ -0.92
CLCN3-209ENST00000513761 C1orf141Q5JVX7 400 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 RPAP2Q8IXW5 612 aaPredicted RBP9.29□□□□□ -0.92
CLCN3-209ENST00000513761 CCDC112Q8NEF3 446 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 MIS18AQ9NYP9 233 aa9.29□□□□□ -0.92
CLCN3-209ENST00000513761 CCDC30Q5VVM6 783 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 RASSF8Q8NHQ8 419 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 NEXNQ0ZGT2 675 aa9.28□□□□□ -0.92
CLCN3-209ENST00000513761 LARP6Q9BRS8 491 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms