RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 U2SURPO15042 1029 aaKnown RBP12.41□□□□□ -0.42
NPHP3-209ENST00000493732 PLEKHF1Q96S99 279 aa12.41□□□□□ -0.42
NPHP3-209ENST00000493732 CABP1Q9NZU7 370 aa12.41□□□□□ -0.42
NPHP3-209ENST00000493732 FAM135BQ49AJ0 1406 aa12.4□□□□□ -0.42
NPHP3-209ENST00000493732 KIF20BQ96Q89 1820 aa12.4□□□□□ -0.42
NPHP3-209ENST00000493732 FCHSD2O94868 740 aa12.4□□□□□ -0.42
NPHP3-209ENST00000493732 ZMYM3Q14202 1370 aa12.39□□□□□ -0.43
NPHP3-209ENST00000493732 TMPOP42166 694 aaKnown RBP12.39□□□□□ -0.43
NPHP3-209ENST00000493732 NPM2Q86SE8 214 aaKnown RBP12.39□□□□□ -0.43
NPHP3-209ENST00000493732 FRAT1Q92837 279 aaPredicted RBP12.39□□□□□ -0.43
NPHP3-209ENST00000493732 CDC42BPGQ6DT37 1551 aa12.39□□□□□ -0.43
NPHP3-209ENST00000493732 SETD1AO15047 1707 aaKnown RBP12.39□□□□□ -0.43
NPHP3-209ENST00000493732 TECPR2O15040 1411 aa12.38□□□□□ -0.43
NPHP3-209ENST00000493732 EDC4Q6P2E9 1401 aaKnown RBP12.38□□□□□ -0.43
NPHP3-209ENST00000493732 WASLO00401 505 aaPredicted RBP12.38□□□□□ -0.43
NPHP3-209ENST00000493732 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
NPHP3-209ENST00000493732 CALD1Q05682 793 aaKnown RBP12.38□□□□□ -0.43
NPHP3-209ENST00000493732 ZNF428Q96B54 188 aa12.38□□□□□ -0.43
NPHP3-209ENST00000493732 ZKSCAN2Q63HK3 967 aa12.37□□□□□ -0.43
NPHP3-209ENST00000493732 COG6Q9Y2V7 657 aa12.37□□□□□ -0.43
NPHP3-209ENST00000493732 KNDC1Q76NI1 1749 aa12.37□□□□□ -0.43
NPHP3-209ENST00000493732 ZNF692Q9BU19 519 aaPredicted RBP12.37□□□□□ -0.43
NPHP3-209ENST00000493732 RWDD1Q9H446 243 aaPredicted RBP12.37□□□□□ -0.43
NPHP3-209ENST00000493732 TNRQ92752 1358 aa12.36□□□□□ -0.43
NPHP3-209ENST00000493732 CPSF1Q10570 1443 aaKnown RBP12.36□□□□□ -0.43
NPHP3-209ENST00000493732 PPM1GO15355 546 aaPredicted RBP12.36□□□□□ -0.43
NPHP3-209ENST00000493732 MLECQ14165 292 aa12.36□□□□□ -0.43
NPHP3-209ENST00000493732 PANK1Q8TE04 598 aa12.36□□□□□ -0.43
NPHP3-209ENST00000493732 AATKQ6ZMQ8 1374 aa12.36□□□□□ -0.43
NPHP3-209ENST00000493732 RTL5Q5HYW3 569 aaPredicted RBP12.35□□□□□ -0.43
NPHP3-209ENST00000493732 DAXXQ9UER7 740 aaPredicted RBP12.35□□□□□ -0.43
NPHP3-209ENST00000493732 IPO8O15397 1037 aaKnown RBP12.35□□□□□ -0.43
NPHP3-209ENST00000493732 RIPK4P57078 832 aa12.35□□□□□ -0.43
NPHP3-209ENST00000493732 WAPLQ7Z5K2 1190 aa12.35□□□□□ -0.43
NPHP3-209ENST00000493732 FTSJ3Q8IY81 847 aaKnown RBP12.35□□□□□ -0.43
NPHP3-209ENST00000493732 USP35Q9P2H5 1018 aa12.35□□□□□ -0.43
NPHP3-209ENST00000493732 TRIM35Q9UPQ4 493 aa12.35□□□□□ -0.43
NPHP3-209ENST00000493732 CCDC61Q9Y6R9 512 aa12.35□□□□□ -0.43
NPHP3-209ENST00000493732 KIF13AQ9H1H9 1805 aa12.34□□□□□ -0.43
NPHP3-209ENST00000493732 MVPQ14764 893 aaKnown RBP12.34□□□□□ -0.43
NPHP3-209ENST00000493732 C8orf34Q49A92 452 aa12.34□□□□□ -0.43
NPHP3-209ENST00000493732 DZIP1LQ8IYY4 767 aaKnown RBP12.34□□□□□ -0.43
NPHP3-209ENST00000493732 PPIP5K1Q6PFW1 1433 aa12.34□□□□□ -0.43
NPHP3-209ENST00000493732 CPS1P31327 1500 aa12.34□□□□□ -0.43
NPHP3-209ENST00000493732 NRXN3Q9Y4C0 1643 aa12.34□□□□□ -0.43
NPHP3-209ENST00000493732 IGHDP01880 384 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 RGS3P49796 1198 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 ALDH1L2Q3SY69 923 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 CHMP4BQ9H444 224 aaKnown RBP12.33□□□□□ -0.44
NPHP3-209ENST00000493732 POLKQ9UBT6 870 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 KIF16BQ96L93 1317 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 TMEM2Q9UHN6 1383 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 SENP3Q9H4L4 574 aaPredicted RBP12.33□□□□□ -0.44
NPHP3-209ENST00000493732 SMC4Q9NTJ3 1288 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 DDX19BQ9UMR2 479 aa12.33□□□□□ -0.44
NPHP3-209ENST00000493732 CDK12Q9NYV4 1490 aaPredicted RBP12.32□□□□□ -0.44
NPHP3-209ENST00000493732 METP08581 1390 aa12.32□□□□□ -0.44
NPHP3-209ENST00000493732 EXOSC9Q06265 439 aaKnown RBP12.32□□□□□ -0.44
NPHP3-209ENST00000493732 LMOD3Q0VAK6 560 aa12.32□□□□□ -0.44
NPHP3-209ENST00000493732 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.32□□□□□ -0.44
NPHP3-209ENST00000493732 NUDT16Q96DE0 195 aaKnown RBP12.32□□□□□ -0.44
NPHP3-209ENST00000493732 COG3Q96JB2 828 aa12.32□□□□□ -0.44
NPHP3-209ENST00000493732 ATF7IPQ6VMQ6 1270 aa12.31□□□□□ -0.44
NPHP3-209ENST00000493732 RSPH6AQ9H0K4 717 aa12.31□□□□□ -0.44
NPHP3-209ENST00000493732 BRPF1P55201 1214 aaPredicted RBP12.3□□□□□ -0.44
NPHP3-209ENST00000493732 NFE2L2Q16236 605 aa12.3□□□□□ -0.44
NPHP3-209ENST00000493732 RLBP1P12271 317 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 PRKAR2BP31323 418 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 TXNDC2Q86VQ3 553 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 PLEKHG1Q9ULL1 1385 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 LRRC7Q96NW7 1537 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 MON2Q7Z3U7 1717 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 UBR1Q8IWV7 1749 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 PRKCSHP14314 528 aaPredicted RBP12.29□□□□□ -0.44
NPHP3-209ENST00000493732 GNAI1P63096 354 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 SKAP1Q86WV1 359 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 TSR2Q969E8 191 aaKnown RBP12.29□□□□□ -0.44
NPHP3-209ENST00000493732 BCL2L13Q9BXK5 485 aa12.29□□□□□ -0.44
NPHP3-209ENST00000493732 HDAC1Q13547 482 aaPredicted RBP12.28□□□□□ -0.44
NPHP3-209ENST00000493732 SSH1Q8WYL5 1049 aa12.28□□□□□ -0.44
NPHP3-209ENST00000493732 UPF2Q9HAU5 1272 aaKnown RBP12.28□□□□□ -0.44
NPHP3-209ENST00000493732 PCDHB15Q9Y5E8 787 aa12.28□□□□□ -0.44
NPHP3-209ENST00000493732 MAP2P11137 1827 aaKnown RBP12.28□□□□□ -0.44
NPHP3-209ENST00000493732 VIRMAQ69YN4 1812 aaKnown RBP12.28□□□□□ -0.44
NPHP3-209ENST00000493732 IL13P35225 146 aa12.27□□□□□ -0.44
NPHP3-209ENST00000493732 HAP1P54257 671 aaPredicted RBP12.27□□□□□ -0.44
NPHP3-209ENST00000493732 NBR1Q14596 966 aa12.27□□□□□ -0.44
NPHP3-209ENST00000493732 ITSN1Q15811 1721 aa12.27□□□□□ -0.45
NPHP3-209ENST00000493732 ARHGAP45Q92619 1136 aa12.27□□□□□ -0.45
NPHP3-209ENST00000493732 IFT57Q9NWB7 429 aa12.27□□□□□ -0.45
NPHP3-209ENST00000493732 EID1Q9Y6B2 187 aa12.27□□□□□ -0.45
NPHP3-209ENST00000493732 AKAP12Q02952 1782 aa12.27□□□□□ -0.45
NPHP3-209ENST00000493732 TRIM27P14373 513 aa12.26□□□□□ -0.45
NPHP3-209ENST00000493732 PLEKHG3A1L390 1219 aa12.25□□□□□ -0.45
NPHP3-209ENST00000493732 NME9Q86XW9 330 aa12.25□□□□□ -0.45
NPHP3-209ENST00000493732 ADAMTS13Q76LX8 1427 aa12.25□□□□□ -0.45
NPHP3-209ENST00000493732 ITPRIPQ8IWB1 547 aa12.25□□□□□ -0.45
NPHP3-209ENST00000493732 NOB1Q9ULX3 412 aaKnown RBP12.25□□□□□ -0.45
NPHP3-209ENST00000493732 PDZRN3Q9UPQ7 1066 aa12.25□□□□□ -0.45
NPHP3-209ENST00000493732 C3P01024 1663 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms