RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 PNNQ9H307 717 aaKnown RBP33.69■■■□□ 2.98
HLA-C-208ENST00000487245 VIRMAQ69YN4 1812 aaKnown RBP33.69■■■□□ 2.98
HLA-C-208ENST00000487245 NRXN3Q9Y4C0 1643 aa33.68■■■□□ 2.98
HLA-C-208ENST00000487245 BCL11AQ9H165 835 aa33.67■■■□□ 2.98
HLA-C-208ENST00000487245 WAPLQ7Z5K2 1190 aa33.67■■■□□ 2.98
HLA-C-208ENST00000487245 C8orf34Q49A92 452 aa33.66■■■□□ 2.98
HLA-C-208ENST00000487245 PNPLA6Q8IY17 1366 aa33.66■■■□□ 2.98
HLA-C-208ENST00000487245 CANXP27824 592 aaKnown RBP33.65■■■□□ 2.98
HLA-C-208ENST00000487245 RARSP54136 660 aaKnown RBP33.65■■■□□ 2.98
HLA-C-208ENST00000487245 RTL5Q5HYW3 569 aaPredicted RBP33.65■■■□□ 2.98
HLA-C-208ENST00000487245 PLEKHF1Q96S99 279 aa33.65■■■□□ 2.98
HLA-C-208ENST00000487245 TNRQ92752 1358 aa33.65■■■□□ 2.98
HLA-C-208ENST00000487245 KNDC1Q76NI1 1749 aa33.63■■■□□ 2.97
HLA-C-208ENST00000487245 FAM135BQ49AJ0 1406 aa33.63■■■□□ 2.97
HLA-C-208ENST00000487245 U2SURPO15042 1029 aaKnown RBP33.63■■■□□ 2.97
HLA-C-208ENST00000487245 CT47B1P0C2W7 299 aaPredicted RBP33.63■■■□□ 2.97
HLA-C-208ENST00000487245 DIAPH1O60610 1272 aaKnown RBP33.62■■■□□ 2.97
HLA-C-208ENST00000487245 MAPK8IP3Q9UPT6 1336 aa33.61■■■□□ 2.97
HLA-C-208ENST00000487245 WASLO00401 505 aaPredicted RBP33.61■■■□□ 2.97
HLA-C-208ENST00000487245 CLUAP1Q96AJ1 413 aa33.61■■■□□ 2.97
HLA-C-208ENST00000487245 USP35Q9P2H5 1018 aa33.61■■■□□ 2.97
HLA-C-208ENST00000487245 TECPR2O15040 1411 aa33.6■■■□□ 2.97
HLA-C-208ENST00000487245 PPM1GO15355 546 aaPredicted RBP33.6■■■□□ 2.97
HLA-C-208ENST00000487245 TMPOP42166 694 aaKnown RBP33.59■■■□□ 2.97
HLA-C-208ENST00000487245 METP08581 1390 aa33.58■■■□□ 2.97
HLA-C-208ENST00000487245 IL16Q14005 1332 aa33.57■■■□□ 2.97
HLA-C-208ENST00000487245 CPSF1Q10570 1443 aaKnown RBP33.56■■■□□ 2.96
HLA-C-208ENST00000487245 EDC4Q6P2E9 1401 aaKnown RBP33.56■■■□□ 2.96
HLA-C-208ENST00000487245 CDC42BPGQ6DT37 1551 aa33.56■■■□□ 2.96
HLA-C-208ENST00000487245 IGHDP01880 384 aa33.54■■■□□ 2.96
HLA-C-208ENST00000487245 CPS1P31327 1500 aa33.54■■■□□ 2.96
HLA-C-208ENST00000487245 TMEM2Q9UHN6 1383 aa33.53■■■□□ 2.96
HLA-C-208ENST00000487245 PPIP5K1Q6PFW1 1433 aa33.52■■■□□ 2.96
HLA-C-208ENST00000487245 PANK1Q8TE04 598 aa33.52■■■□□ 2.96
HLA-C-208ENST00000487245 FCHSD2O94868 740 aa33.52■■■□□ 2.96
HLA-C-208ENST00000487245 UBR1Q8IWV7 1749 aa33.51■■■□□ 2.96
HLA-C-208ENST00000487245 FRAT1Q92837 279 aaPredicted RBP33.51■■■□□ 2.96
HLA-C-208ENST00000487245 COG6Q9Y2V7 657 aa33.51■■■□□ 2.96
HLA-C-208ENST00000487245 RGS3P49796 1198 aa33.5■■■□□ 2.95
HLA-C-208ENST00000487245 TXNDC2Q86VQ3 553 aa33.5■■■□□ 2.95
HLA-C-208ENST00000487245 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.5■■■□□ 2.95
HLA-C-208ENST00000487245 TRIM35Q9UPQ4 493 aa33.5■■■□□ 2.95
HLA-C-208ENST00000487245 PMFBP1Q8TBY8 1022 aa33.48■■■□□ 2.95
HLA-C-208ENST00000487245 NUDT16Q96DE0 195 aaKnown RBP33.48■■■□□ 2.95
HLA-C-208ENST00000487245 POLKQ9UBT6 870 aa33.48■■■□□ 2.95
HLA-C-208ENST00000487245 CCDC61Q9Y6R9 512 aa33.46■■■□□ 2.95
HLA-C-208ENST00000487245 TRHP20396 242 aaPredicted RBP33.45■■■□□ 2.95
HLA-C-208ENST00000487245 NEFMP07197 916 aa33.44■■■□□ 2.94
HLA-C-208ENST00000487245 RIPK4P57078 832 aa33.44■■■□□ 2.94
HLA-C-208ENST00000487245 AATKQ6ZMQ8 1374 aa33.44■■■□□ 2.94
HLA-C-208ENST00000487245 ZNF692Q9BU19 519 aaPredicted RBP33.43■■■□□ 2.94
HLA-C-208ENST00000487245 LAS1LQ9Y4W2 734 aaKnown RBP33.43■■■□□ 2.94
HLA-C-208ENST00000487245 MON2Q7Z3U7 1717 aa33.41■■■□□ 2.94
HLA-C-208ENST00000487245 MAP2P11137 1827 aaKnown RBP33.41■■■□□ 2.94
HLA-C-208ENST00000487245 ZKSCAN2Q63HK3 967 aa33.4■■■□□ 2.94
HLA-C-208ENST00000487245 PLEKHG1Q9ULL1 1385 aa33.4■■■□□ 2.94
HLA-C-208ENST00000487245 ADAMTS13Q76LX8 1427 aa33.38■■■□□ 2.93
HLA-C-208ENST00000487245 RLBP1P12271 317 aa33.38■■■□□ 2.93
HLA-C-208ENST00000487245 RSPH6AQ9H0K4 717 aa33.38■■■□□ 2.93
HLA-C-208ENST00000487245 CDK12Q9NYV4 1490 aaPredicted RBP33.38■■■□□ 2.93
HLA-C-208ENST00000487245 AKAP12Q02952 1782 aa33.38■■■□□ 2.93
HLA-C-208ENST00000487245 EXOSC9Q06265 439 aaKnown RBP33.37■■■□□ 2.93
HLA-C-208ENST00000487245 TSR2Q969E8 191 aaKnown RBP33.37■■■□□ 2.93
HLA-C-208ENST00000487245 LRRC7Q96NW7 1537 aa33.37■■■□□ 2.93
HLA-C-208ENST00000487245 COG3Q96JB2 828 aa33.36■■■□□ 2.93
HLA-C-208ENST00000487245 ITSN1Q15811 1721 aa33.36■■■□□ 2.93
HLA-C-208ENST00000487245 BCL2L13Q9BXK5 485 aa33.35■■■□□ 2.93
HLA-C-208ENST00000487245 NME9Q86XW9 330 aa33.34■■■□□ 2.93
HLA-C-208ENST00000487245 DAXXQ9UER7 740 aaPredicted RBP33.34■■■□□ 2.93
HLA-C-208ENST00000487245 PCDHB15Q9Y5E8 787 aa33.33■■■□□ 2.93
HLA-C-208ENST00000487245 PRKAR2BP31323 418 aa33.33■■■□□ 2.93
HLA-C-208ENST00000487245 MVPQ14764 893 aaKnown RBP33.33■■■□□ 2.93
HLA-C-208ENST00000487245 DZIP1LQ8IYY4 767 aaKnown RBP33.33■■■□□ 2.93
HLA-C-208ENST00000487245 CALD1Q05682 793 aaKnown RBP33.32■■■□□ 2.92
HLA-C-208ENST00000487245 SMC4Q9NTJ3 1288 aa33.32■■■□□ 2.92
HLA-C-208ENST00000487245 ROBO2Q9HCK4 1378 aa33.32■■■□□ 2.92
HLA-C-208ENST00000487245 C3P01024 1663 aa33.31■■■□□ 2.92
HLA-C-208ENST00000487245 IL13P35225 146 aa33.31■■■□□ 2.92
HLA-C-208ENST00000487245 RWDD1Q9H446 243 aaPredicted RBP33.31■■■□□ 2.92
HLA-C-208ENST00000487245 NFE2L2Q16236 605 aa33.3■■■□□ 2.92
HLA-C-208ENST00000487245 FTSJ3Q8IY81 847 aaKnown RBP33.3■■■□□ 2.92
HLA-C-208ENST00000487245 TNNQ9UQP3 1299 aa33.3■■■□□ 2.92
HLA-C-208ENST00000487245 USP19O94966 1318 aa33.3■■■□□ 2.92
HLA-C-208ENST00000487245 EID1Q9Y6B2 187 aa33.29■■■□□ 2.92
HLA-C-208ENST00000487245 ZNF428Q96B54 188 aa33.28■■■□□ 2.92
HLA-C-208ENST00000487245 EMILIN1Q9Y6C2 1016 aa33.28■■■□□ 2.92
HLA-C-208ENST00000487245 PRR36Q9H6K5 1346 aa33.27■■■□□ 2.92
HLA-C-208ENST00000487245 LTKP29376 864 aa33.27■■■□□ 2.92
HLA-C-208ENST00000487245 ALDH1L2Q3SY69 923 aa33.27■■■□□ 2.92
HLA-C-208ENST00000487245 SSH1Q8WYL5 1049 aa33.27■■■□□ 2.92
HLA-C-208ENST00000487245 FBLN1P23142 703 aa33.26■■■□□ 2.91
HLA-C-208ENST00000487245 IPO8O15397 1037 aaKnown RBP33.25■■■□□ 2.91
HLA-C-208ENST00000487245 PLEKHG3A1L390 1219 aa33.24■■■□□ 2.91
HLA-C-208ENST00000487245 KIF16BQ96L93 1317 aa33.23■■■□□ 2.91
HLA-C-208ENST00000487245 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.23■■■□□ 2.91
HLA-C-208ENST00000487245 ATF7IPQ6VMQ6 1270 aa33.23■■■□□ 2.91
HLA-C-208ENST00000487245 SLIT1O75093 1534 aa33.23■■■□□ 2.91
HLA-C-208ENST00000487245 ZRANB1Q9UGI0 708 aa33.22■■■□□ 2.91
HLA-C-208ENST00000487245 PDZRN3Q9UPQ7 1066 aa33.22■■■□□ 2.91
HLA-C-208ENST00000487245 NCKAP5LQ9HCH0 1330 aa33.22■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms