RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 NEUROD2Q15784 382 aa29.6■■■□□ 2.33
PDLIM2-203ENST00000339162 PIK3R4Q99570 1358 aa29.6■■■□□ 2.33
PDLIM2-203ENST00000339162 U2SURPO15042 1029 aaKnown RBP29.59■■■□□ 2.33
PDLIM2-203ENST00000339162 PMFBP1Q8TBY8 1022 aa29.59■■■□□ 2.33
PDLIM2-203ENST00000339162 RRP7AQ9Y3A4 280 aaKnown RBP29.59■■■□□ 2.33
PDLIM2-203ENST00000339162 NKTRP30414 1462 aaKnown RBP29.59■■■□□ 2.33
PDLIM2-203ENST00000339162 RUNDC1Q96C34 613 aa29.59■■■□□ 2.33
PDLIM2-203ENST00000339162 MON2Q7Z3U7 1717 aa29.58■■■□□ 2.33
PDLIM2-203ENST00000339162 PLEKHG3A1L390 1219 aa29.58■■■□□ 2.33
PDLIM2-203ENST00000339162 ITSN1Q15811 1721 aa29.58■■■□□ 2.33
PDLIM2-203ENST00000339162 POLKQ9UBT6 870 aa29.57■■■□□ 2.32
PDLIM2-203ENST00000339162 AKAP12Q02952 1782 aa29.57■■■□□ 2.32
PDLIM2-203ENST00000339162 TCP11L2Q8N4U5 519 aa29.56■■■□□ 2.32
PDLIM2-203ENST00000339162 SPINK5Q9NQ38 1064 aaPredicted RBP29.56■■■□□ 2.32
PDLIM2-203ENST00000339162 COL3A1P02461 1466 aaPredicted RBP29.56■■■□□ 2.32
PDLIM2-203ENST00000339162 TOPAZ1Q8N9V7 1692 aa29.56■■■□□ 2.32
PDLIM2-203ENST00000339162 COG3Q96JB2 828 aa29.55■■■□□ 2.32
PDLIM2-203ENST00000339162 DMRT2Q9Y5R5 561 aa29.55■■■□□ 2.32
PDLIM2-203ENST00000339162 DUSP27Q5VZP5 1158 aa29.55■■■□□ 2.32
PDLIM2-203ENST00000339162 EMILIN1Q9Y6C2 1016 aa29.53■■■□□ 2.32
PDLIM2-203ENST00000339162 TTC21BQ7Z4L5 1316 aa29.53■■■□□ 2.32
PDLIM2-203ENST00000339162 ERICH6BQ5W0A0 696 aa29.52■■■□□ 2.32
PDLIM2-203ENST00000339162 DIAPH1O60610 1272 aaKnown RBP29.52■■■□□ 2.32
PDLIM2-203ENST00000339162 NPHP4O75161 1426 aaPredicted RBP29.52■■■□□ 2.32
PDLIM2-203ENST00000339162 SLFN5Q08AF3 891 aa29.52■■■□□ 2.32
PDLIM2-203ENST00000339162 PNPLA6Q8IY17 1366 aa29.51■■■□□ 2.31
PDLIM2-203ENST00000339162 RRP1P56182 461 aaKnown RBP29.51■■■□□ 2.31
PDLIM2-203ENST00000339162 WWC1Q8IX03 1113 aa29.5■■■□□ 2.31
PDLIM2-203ENST00000339162 CHD2O14647 1828 aaKnown RBP29.5■■■□□ 2.31
PDLIM2-203ENST00000339162 USP6P35125 1406 aa29.5■■■□□ 2.31
PDLIM2-203ENST00000339162 RGPD8O14715 1765 aaPredicted RBP29.5■■■□□ 2.31
PDLIM2-203ENST00000339162 RRS1Q15050 365 aaKnown RBP29.49■■■□□ 2.31
PDLIM2-203ENST00000339162 NGDNQ8NEJ9 315 aaKnown RBP29.49■■■□□ 2.31
PDLIM2-203ENST00000339162 PPP4R2Q9NY27 417 aa29.49■■■□□ 2.31
PDLIM2-203ENST00000339162 MAP2P11137 1827 aaKnown RBP29.48■■■□□ 2.31
PDLIM2-203ENST00000339162 IQSEC2Q5JU85 1478 aa29.47■■■□□ 2.31
PDLIM2-203ENST00000339162 NGEFQ8N5V2 710 aa29.46■■■□□ 2.31
PDLIM2-203ENST00000339162 NRKQ7Z2Y5 1582 aa29.45■■■□□ 2.3
PDLIM2-203ENST00000339162 B4GALNT3Q6L9W6 998 aa29.44■■■□□ 2.3
PDLIM2-203ENST00000339162 TRMT2AQ8IZ69 625 aaKnown RBP29.44■■■□□ 2.3
PDLIM2-203ENST00000339162 PLIN1O60240 522 aa29.43■■■□□ 2.3
PDLIM2-203ENST00000339162 PLEKHF1Q96S99 279 aa29.43■■■□□ 2.3
PDLIM2-203ENST00000339162 AATKQ6ZMQ8 1374 aa29.42■■■□□ 2.3
PDLIM2-203ENST00000339162 E9PSI1 815 aa29.41■■■□□ 2.3
PDLIM2-203ENST00000339162 SOX12O15370 315 aa29.41■■■□□ 2.3
PDLIM2-203ENST00000339162 SSH2Q76I76 1423 aa29.4■■■□□ 2.3
PDLIM2-203ENST00000339162 NALCNQ8IZF0 1738 aa29.4■■■□□ 2.3
PDLIM2-203ENST00000339162 PHF23Q9BUL5 403 aaPredicted RBP29.39■■■□□ 2.29
PDLIM2-203ENST00000339162 ANKARQ7Z5J8 1434 aa29.38■■■□□ 2.29
PDLIM2-203ENST00000339162 C14orf37Q86TY3 774 aa29.37■■■□□ 2.29
PDLIM2-203ENST00000339162 FMN2Q9NZ56 1722 aa29.37■■■□□ 2.29
PDLIM2-203ENST00000339162 OVOS2A0A0J9YW53 1432 aa29.37■■■□□ 2.29
PDLIM2-203ENST00000339162 OVOS2Q6IE36 1432 aa29.37■■■□□ 2.29
PDLIM2-203ENST00000339162 MAPK8IP3Q9UPT6 1336 aa29.37■■■□□ 2.29
PDLIM2-203ENST00000339162 HMOX1P09601 288 aa29.36■■■□□ 2.29
PDLIM2-203ENST00000339162 IL13P35225 146 aa29.35■■■□□ 2.29
PDLIM2-203ENST00000339162 CDK12Q9NYV4 1490 aaPredicted RBP29.34■■■□□ 2.29
PDLIM2-203ENST00000339162 TMPOP42166 694 aaKnown RBP29.34■■■□□ 2.29
PDLIM2-203ENST00000339162 CCDC27Q2M243 656 aa29.33■■■□□ 2.29
PDLIM2-203ENST00000339162 TTC21AQ8NDW8 1320 aa29.33■■■□□ 2.29
PDLIM2-203ENST00000339162 EXOC6Q8TAG9 804 aa29.33■■■□□ 2.29
PDLIM2-203ENST00000339162 PRKAR2BP31323 418 aa29.32■■■□□ 2.28
PDLIM2-203ENST00000339162 HSPA2P54652 639 aa29.32■■■□□ 2.28
PDLIM2-203ENST00000339162 ADGRL3Q9HAR2 1447 aa29.32■■■□□ 2.28
PDLIM2-203ENST00000339162 FCHSD2O94868 740 aa29.32■■■□□ 2.28
PDLIM2-203ENST00000339162 RSPH6AQ9H0K4 717 aa29.32■■■□□ 2.28
PDLIM2-203ENST00000339162 NUTM2GQ5VZR2 741 aa29.31■■■□□ 2.28
PDLIM2-203ENST00000339162 WDR63Q8IWG1 891 aa29.3■■■□□ 2.28
PDLIM2-203ENST00000339162 PHF8Q9UPP1 1060 aa29.3■■■□□ 2.28
PDLIM2-203ENST00000339162 LRRC7Q96NW7 1537 aa29.29■■■□□ 2.28
PDLIM2-203ENST00000339162 PAK3O75914 559 aaPredicted RBP29.29■■■□□ 2.28
PDLIM2-203ENST00000339162 ESCO1Q5FWF5 840 aa29.28■■■□□ 2.28
PDLIM2-203ENST00000339162 PROSER2Q86WR7 435 aaPredicted RBP29.28■■■□□ 2.28
PDLIM2-203ENST00000339162 TRIM35Q9UPQ4 493 aa29.28■■■□□ 2.28
PDLIM2-203ENST00000339162 RIPK4P57078 832 aa29.28■■■□□ 2.28
PDLIM2-203ENST00000339162 PNNQ9H307 717 aaKnown RBP29.28■■■□□ 2.28
PDLIM2-203ENST00000339162 USP31Q70CQ4 1352 aa29.27■■■□□ 2.28
PDLIM2-203ENST00000339162 NLRP6P59044 892 aa29.26■■■□□ 2.28
PDLIM2-203ENST00000339162 C20orf194Q5TEA3 1177 aa29.26■■■□□ 2.28
PDLIM2-203ENST00000339162 PHACTR3Q96KR7 559 aa29.26■■■□□ 2.28
PDLIM2-203ENST00000339162 HSP90AB2PQ58FF8 381 aa29.25■■■□□ 2.27
PDLIM2-203ENST00000339162 CCDC136Q96JN2 1154 aa29.25■■■□□ 2.27
PDLIM2-203ENST00000339162 BCAR3O75815 825 aa29.24■■■□□ 2.27
PDLIM2-203ENST00000339162 NCBP3Q53F19 620 aaKnown RBP29.24■■■□□ 2.27
PDLIM2-203ENST00000339162 PIK3C2AO00443 1686 aa29.24■■■□□ 2.27
PDLIM2-203ENST00000339162 KDM4FA0A1W2PPD8 638 aa29.24■■■□□ 2.27
PDLIM2-203ENST00000339162 EIF4A2Q14240 407 aaKnown RBP29.24■■■□□ 2.27
PDLIM2-203ENST00000339162 ABTB2Q8N961 1025 aa29.23■■■□□ 2.27
PDLIM2-203ENST00000339162 MAP3K19Q56UN5 1328 aa29.22■■■□□ 2.27
PDLIM2-203ENST00000339162 NWD1Q149M9 1564 aa29.22■■■□□ 2.27
PDLIM2-203ENST00000339162 NEFMP07197 916 aa29.21■■■□□ 2.27
PDLIM2-203ENST00000339162 ORAI2Q96SN7 254 aa29.21■■■□□ 2.27
PDLIM2-203ENST00000339162 CRBNQ96SW2 442 aa29.21■■■□□ 2.27
PDLIM2-203ENST00000339162 PEAK1Q9H792 1746 aa29.2■■■□□ 2.27
PDLIM2-203ENST00000339162 TSR2Q969E8 191 aaKnown RBP29.2■■■□□ 2.26
PDLIM2-203ENST00000339162 AEBP1Q8IUX7 1158 aa29.18■■■□□ 2.26
PDLIM2-203ENST00000339162 PSME1Q06323 249 aa29.17■■■□□ 2.26
PDLIM2-203ENST00000339162 MYH16Q9H6N6 1097 aa29.17■■■□□ 2.26
PDLIM2-203ENST00000339162 TSHZ2Q9NRE2 1034 aa29.16■■■□□ 2.26
PDLIM2-203ENST00000339162 XPCQ01831 940 aaPredicted RBP29.16■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms