RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 AIMP1Q12904 312 aaKnown RBP12.96□□□□□ -0.33
CD44-201ENST00000263398 CCDC70Q6NSX1 233 aa12.96□□□□□ -0.33
CD44-201ENST00000263398 AMOTL1Q8IY63 956 aa12.96□□□□□ -0.33
CD44-201ENST00000263398 RNF214Q8ND24 703 aa12.96□□□□□ -0.33
CD44-201ENST00000263398 SAFBQ15424 915 aaKnown RBP eCLIP12.96□□□□□ -0.34
CD44-201ENST00000263398 GNAI2P04899 355 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 VPS53Q5VIR6 699 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 NFXL1Q6ZNB6 911 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 ZNF428Q96B54 188 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 FSD1Q9BTV5 496 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 C1orf115Q9H7X2 142 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 SLC52A1Q9NWF4 448 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 ERICH2A1L162 156 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 NOL10Q9BSC4 688 aaKnown RBP12.95□□□□□ -0.34
CD44-201ENST00000263398 IFT57Q9NWB7 429 aa12.95□□□□□ -0.34
CD44-201ENST00000263398 NLRP2Q9NX02 1062 aa12.94□□□□□ -0.34
CD44-201ENST00000263398 LETM1O95202 739 aaPredicted RBP12.94□□□□□ -0.34
CD44-201ENST00000263398 SDF4Q9BRK5 362 aa12.94□□□□□ -0.34
CD44-201ENST00000263398 HECW1Q76N89 1606 aa12.94□□□□□ -0.34
CD44-201ENST00000263398 CWC22Q9HCG8 908 aaKnown RBP12.94□□□□□ -0.34
CD44-201ENST00000263398 ZNF692Q9BU19 519 aaPredicted RBP12.93□□□□□ -0.34
CD44-201ENST00000263398 CUL7Q14999 1698 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 ANKRD30BQ9BXX2 1392 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 HIP1O00291 1037 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 PRPF40AO75400 957 aaKnown RBP12.93□□□□□ -0.34
CD44-201ENST00000263398 SLFN5Q08AF3 891 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 NUTM2GQ5VZR2 741 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 BRPF3Q9ULD4 1205 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 SLC4A2P04920 1241 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 WASHC4Q2M389 1173 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 VPS37DQ86XT2 251 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 CCT4P50991 539 aaKnown RBP12.93□□□□□ -0.34
CD44-201ENST00000263398 NAT10Q9H0A0 1025 aaKnown RBP12.93□□□□□ -0.34
CD44-201ENST00000263398 CABP1Q9NZU7 370 aa12.93□□□□□ -0.34
CD44-201ENST00000263398 ARHGEF11O15085 1522 aa12.92□□□□□ -0.34
CD44-201ENST00000263398 GRIN2AQ12879 1464 aa12.92□□□□□ -0.34
CD44-201ENST00000263398 SUPT6HQ7KZ85 1726 aaKnown RBP12.92□□□□□ -0.34
CD44-201ENST00000263398 SULT6B1Q6IMI4 303 aa12.92□□□□□ -0.34
CD44-201ENST00000263398 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.92□□□□□ -0.34
CD44-201ENST00000263398 R3HCC1Q9Y3T6 440 aaKnown RBP12.92□□□□□ -0.34
CD44-201ENST00000263398 ERC1Q8IUD2 1116 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 CDK19Q9BWU1 502 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 K7ELQ4 463 aaPredicted RBP12.91□□□□□ -0.34
CD44-201ENST00000263398 MTERF4Q7Z6M4 381 aaKnown RBP12.91□□□□□ -0.34
CD44-201ENST00000263398 CHD1LQ86WJ1 897 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 WWC1Q8IX03 1113 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 ABTB2Q8N961 1025 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 MAP7D2Q96T17 732 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 CIZ1Q9ULV3 898 aaPredicted RBP12.91□□□□□ -0.34
CD44-201ENST00000263398 RPGRIP1LQ68CZ1 1315 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 PLEKHO1Q53GL0 409 aaPredicted RBP12.91□□□□□ -0.34
CD44-201ENST00000263398 HDGFL1Q5TGJ6 251 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 ZNF771Q7L3S4 317 aaPredicted RBP12.91□□□□□ -0.34
CD44-201ENST00000263398 PCMTD1Q96MG8 357 aaPredicted RBP12.91□□□□□ -0.34
CD44-201ENST00000263398 FOSBP53539 338 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 CCDC173Q0VFZ6 552 aa12.91□□□□□ -0.34
CD44-201ENST00000263398 NCBP3Q53F19 620 aaKnown RBP12.9□□□□□ -0.34
CD44-201ENST00000263398 SYTL4Q96C24 671 aaPredicted RBP12.9□□□□□ -0.34
CD44-201ENST00000263398 PTPRKQ15262 1439 aa12.9□□□□□ -0.34
CD44-201ENST00000263398 FCHSD2O94868 740 aa12.9□□□□□ -0.34
CD44-201ENST00000263398 TSPY26PQ9H489 355 aa12.9□□□□□ -0.34
CD44-201ENST00000263398 ATAD2Q6PL18 1390 aa12.9□□□□□ -0.35
CD44-201ENST00000263398 PDE4CQ08493 712 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 TEX35Q5T0J7 233 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 CCDC27Q2M243 656 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 MNS1Q8NEH6 495 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 FBXW7Q969H0 707 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 LRRCC1Q9C099 1032 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 ARGLU1Q9NWB6 273 aaPredicted RBP12.89□□□□□ -0.35
CD44-201ENST00000263398 GPRASP1Q5JY77 1395 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 TXNDC2Q86VQ3 553 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 TRIM5Q9C035 493 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 C11orf95C9JLR9 678 aaPredicted RBP12.89□□□□□ -0.35
CD44-201ENST00000263398 FIBPO43427 364 aa12.89□□□□□ -0.35
CD44-201ENST00000263398 KINO60870 393 aaKnown RBP12.89□□□□□ -0.35
CD44-201ENST00000263398 ATF3P18847 181 aa12.88□□□□□ -0.35
CD44-201ENST00000263398 MCM4P33991 863 aa12.88□□□□□ -0.35
CD44-201ENST00000263398 DHX16O60231 1041 aaKnown RBP12.88□□□□□ -0.35
CD44-201ENST00000263398 RPAP2Q8IXW5 612 aaPredicted RBP12.88□□□□□ -0.35
CD44-201ENST00000263398 SRCIN1Q9C0H9 1055 aa12.88□□□□□ -0.35
CD44-201ENST00000263398 OLFM4Q6UX06 510 aa12.87□□□□□ -0.35
CD44-201ENST00000263398 WDR33Q9C0J8 1336 aaKnown RBP12.87□□□□□ -0.35
CD44-201ENST00000263398 RAPGEF3O95398 923 aa12.87□□□□□ -0.35
CD44-201ENST00000263398 TMPOP42166 694 aaKnown RBP12.87□□□□□ -0.35
CD44-201ENST00000263398 HMGN5P82970 282 aaKnown RBP12.87□□□□□ -0.35
CD44-201ENST00000263398 ABCC5O15440 1437 aa12.87□□□□□ -0.35
CD44-201ENST00000263398 XBP1P17861 261 aa12.87□□□□□ -0.35
CD44-201ENST00000263398 CYP46A1Q9Y6A2 500 aa12.86□□□□□ -0.35
CD44-201ENST00000263398 PTPN23Q9H3S7 1636 aa12.86□□□□□ -0.35
CD44-201ENST00000263398 MAP3K1Q13233 1512 aa12.86□□□□□ -0.35
CD44-201ENST00000263398 IL27Q8NEV9 243 aa12.86□□□□□ -0.35
CD44-201ENST00000263398 THOC2Q8NI27 1593 aaKnown RBP12.86□□□□□ -0.35
CD44-201ENST00000263398 DNAJC2Q99543 621 aaKnown RBP12.85□□□□□ -0.35
CD44-201ENST00000263398 GRPEL1Q9HAV7 217 aa12.85□□□□□ -0.35
CD44-201ENST00000263398 TBC1D2BQ9UPU7 963 aa12.85□□□□□ -0.35
CD44-201ENST00000263398 SART3Q15020 963 aaKnown RBP12.85□□□□□ -0.35
CD44-201ENST00000263398 AEBP1Q8IUX7 1158 aa12.85□□□□□ -0.35
CD44-201ENST00000263398 BRMS1Q9HCU9 246 aa12.85□□□□□ -0.35
CD44-201ENST00000263398 ANKRD1Q15327 319 aa12.85□□□□□ -0.35
CD44-201ENST00000263398 NFE2L2Q16236 605 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms