RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SAT1P21673 171 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 HARS2P49590 506 aaKnown RBP13.53□□□□□ -0.24
CLN3-210ENST00000563874 PITX1P78337 314 aaPredicted RBP13.53□□□□□ -0.24
CLN3-210ENST00000563874 DEUP1Q05D60 604 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 TLR1Q15399 786 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 MFSD4BQ5TF39 518 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 PLPPR4Q7Z2D5 763 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 ARPINQ7Z6K5 226 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 STRA8Q7Z7C7 330 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 KBTBD6Q86V97 674 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 OR52K1Q8NGK4 314 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 NAT14Q8WUY8 206 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 CERS2Q96G23 380 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 OLFM3Q96PB7 478 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 DTNAQ9Y4J8 743 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 MYOCOSA0A1B0GUC4 107 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.52□□□□□ -0.24
CLN3-210ENST00000563874 CFLARO15519 480 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 ZFXP17010 805 aaPredicted RBP13.52□□□□□ -0.24
CLN3-210ENST00000563874 ARL4AP40617 200 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 ALDH1A3P47895 512 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 MTTPP55157 894 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 MRPS22P82650 360 aaKnown RBP13.52□□□□□ -0.24
CLN3-210ENST00000563874 DYNC1I2Q13409 638 aaKnown RBP13.52□□□□□ -0.24
CLN3-210ENST00000563874 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.52□□□□□ -0.24
CLN3-210ENST00000563874 ACVR1CQ8NER5 493 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 FAM149B1Q96BN6 582 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 ZNF669Q96BR6 464 aaPredicted RBP13.52□□□□□ -0.24
CLN3-210ENST00000563874 KIAA1257Q9ULG3 409 aa13.52□□□□□ -0.24
CLN3-210ENST00000563874 C22orf31O95567 290 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 POLBP06746 335 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 EPHA3P29320 983 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 FDFT1P37268 417 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 GP5P40197 560 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 CHN2P52757 468 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 PKNOX1P55347 436 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 TNFAIP2Q03169 654 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 GK3PQ14409 553 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 PPP2R5DQ14738 602 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 ANKRD20A4Q4UJ75 823 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 UGT2A3Q6UWM9 527 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 CYS1Q717R9 158 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 TMC7Q7Z402 723 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 SPATA24Q86W54 205 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 RIOX2Q8IUF8 465 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 USP13Q92995 863 aaPredicted RBP13.52□□□□□ -0.25
CLN3-210ENST00000563874 CDH19Q9H159 772 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 VCX3AQ9NNX9 186 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 TBC1D30Q9Y2I9 924 aa13.52□□□□□ -0.25
CLN3-210ENST00000563874 PABPC4LP0CB38 370 aaKnown RBP13.51□□□□□ -0.25
CLN3-210ENST00000563874 TXNP10599 105 aaKnown RBP13.51□□□□□ -0.25
CLN3-210ENST00000563874 MPSTP25325 297 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 DBN1Q16643 649 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 FSTL4Q6MZW2 842 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 EPGNQ6UW88 154 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 PID1Q7Z2X4 250 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 SNX32Q86XE0 403 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 ZNF567Q8N184 647 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 TDRD5Q8NAT2 981 aaKnown RBP13.51□□□□□ -0.25
CLN3-210ENST00000563874 NLRP7Q8WX94 980 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 MARK4Q96L34 752 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 APOL2Q9BQE5 337 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 PRDM12Q9H4Q4 367 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 PCDHB12Q9Y5F1 795 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 AK5Q9Y6K8 562 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 PTPRFP10586 1907 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 SCN1AP35498 2009 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 A0A096LPK6 155 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 HBP1O60381 514 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 MYL4P12829 197 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 MLNP12872 115 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 ALOX15P16050 662 aaPredicted RBP13.51□□□□□ -0.25
CLN3-210ENST00000563874 PMLP29590 882 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLN3-210ENST00000563874 HSP90AA5PQ58FG0 334 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 FSCBQ5H9T9 825 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 GADL1Q6ZQY3 521 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 SDCCAG8Q86SQ7 713 aaPredicted RBP13.51□□□□□ -0.25
CLN3-210ENST00000563874 EXOC8Q8IYI6 725 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 B4GALNT2Q8NHY0 566 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 NCSTNQ92542 709 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 C18orf25Q96B23 403 aaPredicted RBP13.51□□□□□ -0.25
CLN3-210ENST00000563874 DCUN1D1Q96GG9 259 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 VPS33BQ9H267 617 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 SMARCAD1Q9H4L7 1026 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 TCF7L2Q9NQB0 619 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 UBAP1Q9NZ09 502 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 PPP1R1BQ9UD71 204 aaPredicted RBP13.51□□□□□ -0.25
CLN3-210ENST00000563874 TUBGCP4Q9UGJ1 667 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 CDY2AQ9Y6F7 541 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 CDY1Q9Y6F8 540 aa13.51□□□□□ -0.25
CLN3-210ENST00000563874 CCDC160A6NGH7 325 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 COQ9O75208 318 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 ATP6V1B1P15313 513 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 PTPN9P43378 593 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 THOP1P52888 689 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 GRM2Q14416 872 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 TMEM198Q66K66 360 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 PAOXQ6QHF9 649 aa13.5□□□□□ -0.25
CLN3-210ENST00000563874 ZMAT2Q96NC0 199 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms