RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 HDAC11Q96DB2 347 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 SPATA13Q96N96 652 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 RPRD1AQ96P16 312 aaPredicted RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 FERMT1Q9BQL6 677 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ZYG11BQ9C0D3 744 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 CDC42EP4Q9H3Q1 356 aaKnown RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 CERS4Q9HA82 394 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 PPARGC1AQ9UBK2 798 aaKnown RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 YBX2Q9Y2T7 364 aaKnown RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 H0YGN5 161 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 STC2O76061 302 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 STK10O94804 968 aaKnown RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 SYF2O95926 243 aaKnown RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 KLKB1P03952 638 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 MBL2P11226 248 aaPredicted RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 CYP4F8P98187 520 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 MTM1Q13496 603 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 KCNJ11Q14654 390 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 HP1BP3Q5SSJ5 553 aaPredicted RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 COL13A1Q5TAT6 717 aaPredicted RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 ARHGAP36Q6ZRI8 547 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 HOOK3Q86VS8 718 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 CIR1Q86X95 450 aaPredicted RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 UHMK1Q8TAS1 419 aaKnown RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 TGS1Q96RS0 853 aaKnown RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 KLF16Q9BXK1 252 aaPredicted RBP21.84■■□□□ 1.09
CLN3-209ENST00000561689 LRRC3Q9BY71 257 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 SLC39A8Q9C0K1 460 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 NFS1Q9Y697 457 aa21.84■■□□□ 1.09
CLN3-209ENST00000561689 IGLV3-10A0A075B6K4 115 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 ACSL4O60488 711 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 RHOQP17081 205 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 TACR2P21452 398 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 SLC29A2Q14542 456 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 SPDYCQ5MJ68 293 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 PPM1LQ5SGD2 360 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 RFWD3Q6PCD5 774 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 TMC8Q8IU68 726 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 ELMOD1Q8N336 334 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 LZTR1Q8N653 840 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 ARL14EPQ8N8R7 260 aaPredicted RBP21.83■■□□□ 1.09
CLN3-209ENST00000561689 WBP2Q969T9 261 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 PLD4Q96BZ4 506 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 CORO1BQ9BR76 489 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 FOXP3Q9BZS1 431 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 BRD8Q9H0E9 1235 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 SAYSD1Q9NPB0 183 aa21.83■■□□□ 1.09
CLN3-209ENST00000561689 NRG2O14511 850 aaPredicted RBP21.83■■□□□ 1.08
CLN3-209ENST00000561689 RIPK2O43353 540 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 RFPL2O75678 378 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 ACSL3O95573 720 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 APRTP07741 180 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 CORO1AP31146 461 aaKnown RBP21.83■■□□□ 1.08
CLN3-209ENST00000561689 SLC6A4P31645 630 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 SLC11A2P49281 568 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 KYNUQ16719 465 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 HSP90B2PQ58FF3 399 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 DENND2CQ68D51 928 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 TRMT10CQ7L0Y3 403 aaKnown RBP21.83■■□□□ 1.08
CLN3-209ENST00000561689 ZNF567Q8N184 647 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 C9orf72Q96LT7 481 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 MAN1C1Q9NR34 630 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 CDH23Q9H251 3354 aa21.83■■□□□ 1.08
CLN3-209ENST00000561689 WASH4PA8MWX3 477 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 PER2O15055 1255 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 CHADO15335 359 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 BANF1O75531 89 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 SHBGP04278 402 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 GJA1P17302 382 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 HDCP19113 662 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 PTPN3P26045 913 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 HIF1AQ16665 826 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 FAM133BQ5BKY9 247 aaKnown RBP21.82■■□□□ 1.08
CLN3-209ENST00000561689 FNBP1LQ5T0N5 605 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 C4orf22Q6V702 233 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 CCDC13Q8IYE1 715 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 LGI2Q8N0V4 545 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 PCDHA11Q9Y5I1 949 aa21.82■■□□□ 1.08
CLN3-209ENST00000561689 A0A1W2PRU2 124 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 DRGXA6NNA5 263 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 F5H5T6 163 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 MYL4P12829 197 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 EPCAMP16422 314 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 OAS2P29728 719 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 MAGEA4P43358 317 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 MTA1Q13330 715 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 GPM6BQ13491 265 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 FASTKD3Q14CZ7 662 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 CEP85LQ5SZL2 805 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 AFMIDQ63HM1 303 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 PID1Q7Z2X4 250 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 CFAP52Q8N1V2 620 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 ATPAF2Q8N5M1 289 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 MRPS31Q92665 395 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 ZFRQ96KR1 1074 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 ATXN3LQ9H3M9 355 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 NOL6Q9H6R4 1146 aaKnown RBP21.81■■□□□ 1.08
CLN3-209ENST00000561689 TMEM248Q9NWD8 314 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 HCFC1R1Q9NWW0 138 aa21.81■■□□□ 1.08
CLN3-209ENST00000561689 NINJ2Q9NZG7 142 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms