RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 GEN1Q17RS7 908 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 PLEKHG6Q3KR16 790 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 FUT11Q495W5 492 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 KIAA1324Q6UXG2 1013 aaKnown RBP14.56□□□□□ -0.08
LDLR-213ENST00000560502 TADA2BQ86TJ2 420 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 SLC47A2Q86VL8 602 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 CHCHD4Q8N4Q1 142 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 RBBP8NLQ8NC74 664 aaPredicted RBP14.56□□□□□ -0.08
LDLR-213ENST00000560502 CTNNBL1Q8WYA6 563 aaPredicted RBP14.56□□□□□ -0.08
LDLR-213ENST00000560502 DNASE2BQ8WZ79 361 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 ZNF592Q92610 1267 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 BHMTQ93088 406 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 NAPGQ99747 312 aaPredicted RBP14.56□□□□□ -0.08
LDLR-213ENST00000560502 ARID3AQ99856 593 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 DUSP16Q9BY84 665 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 MKRN2Q9H000 416 aaKnown RBP14.56□□□□□ -0.08
LDLR-213ENST00000560502 ISCUQ9H1K1 167 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 THAP10Q9P2Z0 257 aaPredicted RBP14.56□□□□□ -0.08
LDLR-213ENST00000560502 ZNF510Q9Y2H8 683 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 NUMA1Q14980 2115 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 WDFY3Q8IZQ1 3526 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 ITPR1Q14643 2758 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 SH3BP5O60239 455 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 NDUFS2O75306 463 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 LSM8O95777 96 aaKnown RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 IGLV3-19P01714 112 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 HOXB3P14651 431 aaPredicted RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 IL12RB1P42701 662 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 HADHBP55084 474 aaKnown RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 FMO1Q01740 532 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 GRIK2Q13002 908 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 WDR45BQ5MNZ6 344 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 SYCP2LQ5T4T6 812 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 PPP1R26Q5T8A7 1209 aaPredicted RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 TMEM270Q6UE05 265 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 RHOT2Q8IXI1 618 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 RFFLQ8WZ73 363 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 TOE1Q96GM8 510 aaKnown RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 PIWIL1Q96J94 861 aaKnown RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 CAMK1GQ96NX5 476 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 WDR24Q96S15 920 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 CDK5RAP1Q96SZ6 601 aaKnown RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 L2HGDHQ9H9P8 463 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 PRDM16Q9HAZ2 1276 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 ITM2CQ9NQX7 267 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 CISHQ9NSE2 258 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 WSB2Q9NYS7 404 aaPredicted RBP14.55□□□□□ -0.08
LDLR-213ENST00000560502 CABIN1Q9Y6J0 2220 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 APC2O95996 2303 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 ACACAQ13085 2346 aa14.55□□□□□ -0.08
LDLR-213ENST00000560502 TAF4O00268 1085 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 MED7O43513 233 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 MYBL1P10243 752 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 RALAP11233 206 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 GNSP15586 552 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 CHRNB2P17787 502 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 CD58P19256 250 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 MAOBP27338 520 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 GNA15P30679 374 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 CORO1AP31146 461 aaKnown RBP14.54□□□□□ -0.08
LDLR-213ENST00000560502 CHKAP35790 457 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 COG7P83436 770 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 STARD3Q14849 445 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 NAXDQ8IW45 347 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 FAM217AQ8IXS0 508 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 RGL4Q8IZJ4 473 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 SLC35F6Q8N357 371 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 CPXM2Q8N436 756 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 CADM4Q8NFZ8 388 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 SLC20A1Q8WUM9 679 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 ADAMTS14Q8WXS8 1223 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 DCLK3Q9C098 648 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 ZDHHC5Q9C0B5 715 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 SEPT11Q9NVA2 429 aaKnown RBP14.54□□□□□ -0.08
LDLR-213ENST00000560502 TRIM10Q9UDY6 481 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 RASAL2Q9UJF2 1139 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 AGO1Q9UL18 857 aaKnown RBP14.54□□□□□ -0.08
LDLR-213ENST00000560502 KIAA1257Q9ULG3 409 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 JRKLQ9Y4A0 524 aa14.54□□□□□ -0.08
LDLR-213ENST00000560502 ADAMTS20P59510 1910 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 A0A0U1RQJ8 604 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 A0A1B0GTW7 788 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 MACROD2A1Z1Q3 448 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 CBFA2T3O75081 653 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 MMEP08473 750 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 C7P10643 843 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 NCAM1P13591 858 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 RDXP35241 583 aaKnown RBP14.53□□□□□ -0.08
LDLR-213ENST00000560502 COPAP53621 1224 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 GALCP54803 685 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 RING1Q06587 406 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 EFEMP1Q12805 493 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 EIF4HQ15056 248 aaKnown RBP14.53□□□□□ -0.08
LDLR-213ENST00000560502 TRIP6Q15654 476 aaKnown RBP14.53□□□□□ -0.08
LDLR-213ENST00000560502 CLEC16AQ2KHT3 1053 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 RAB41Q5JT25 222 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 ANKS1BQ7Z6G8 1248 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 GLRX5Q86SX6 157 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 PROSER1Q86XN7 944 aa14.53□□□□□ -0.08
LDLR-213ENST00000560502 SYCE1Q8N0S2 351 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms