RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ZNF212Q9UDV6 495 aa12.6□□□□□ -0.39
SHMT2-209ENST00000553949 FBXO10Q9UK96 956 aa12.6□□□□□ -0.39
SHMT2-209ENST00000553949 FBXL21Q9UKT6 434 aa12.6□□□□□ -0.39
SHMT2-209ENST00000553949 CA14Q9ULX7 337 aa12.6□□□□□ -0.39
SHMT2-209ENST00000553949 C3orf70A6NLC5 250 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-209ENST00000553949 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-209ENST00000553949 H0Y626 953 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 TRIM24O15164 1050 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 DDX3YO15523 660 aaKnown RBP12.59□□□□□ -0.39
SHMT2-209ENST00000553949 DCXO43602 365 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 ZRANB2O95218 330 aaKnown RBP eCLIP12.59□□□□□ -0.39
SHMT2-209ENST00000553949 CISD3P0C7P0 127 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 MAPKAPK2P49137 400 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 DGKGP49619 791 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 DNA2P51530 1060 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 GALK1P51570 392 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 RWDD2BP57060 319 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 PRKCQQ04759 706 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 RPS6KA1Q15418 735 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 ANKRD20A8PQ5CZ79 823 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 FSCBQ5H9T9 825 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 C6orf118Q5T5N4 469 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 ASTLQ6HA08 431 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-209ENST00000553949 GRAMD4Q6IC98 578 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 CXorf57Q6NSI4 855 aaKnown RBP12.59□□□□□ -0.39
SHMT2-209ENST00000553949 C1orf228Q6PIY5 440 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 TXNDC11Q6PKC3 985 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 TPRG1Q6ZUI0 275 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 EXD1Q8NHP7 514 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 FIBINQ8TAL6 211 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 WFDC5Q8TCV5 224 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 ALG3Q92685 438 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 RNF25Q96BH1 459 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-209ENST00000553949 FAF2Q96CS3 445 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 PNKPQ96T60 521 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 P2RY13Q9BPV8 354 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 ARHGEF4Q9NR80 690 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 TBC1D30Q9Y2I9 924 aa12.59□□□□□ -0.39
SHMT2-209ENST00000553949 COL4A3Q01955 1670 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 KRBA1A5PL33 1030 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 SHISA7A6NL88 538 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 WASH4PA8MWX3 477 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 ZNF487B1APH4 448 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 MAN2B1O00754 1011 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 COL4A2P08572 1712 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 ERCC2P18074 760 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 AMPD1P23109 780 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 MSNP26038 577 aaKnown RBP12.58□□□□□ -0.4
SHMT2-209ENST00000553949 HLA-FP30511 346 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 OR1E1P30953 314 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 CD70P32970 193 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 GNG11P61952 73 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 KDSRQ06136 332 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 LMAN2Q12907 356 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 TAZQ16635 292 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 MFSD7Q6UXD7 560 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 SPOCD1Q6ZMY3 1216 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 ANKS1BQ7Z6G8 1248 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 SETD3Q86TU7 594 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-209ENST00000553949 VSIG1Q86XK7 387 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 CCDC50Q8IVM0 306 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 SIX5Q8N196 739 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 SLC35F6Q8N357 371 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 PHTF2Q8N3S3 785 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 PCDH19Q8TAB3 1148 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 FAM3CQ92520 227 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 EDAQ92838 391 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 EXOC4Q96A65 974 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 SHDQ96IW2 340 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 RBM41Q96IZ5 413 aaKnown RBP12.58□□□□□ -0.4
SHMT2-209ENST00000553949 LMLNQ96KR4 655 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 FBRSL1Q9HCM7 1045 aaKnown RBP12.58□□□□□ -0.4
SHMT2-209ENST00000553949 ABCB8Q9NUT2 735 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 NDFIP2Q9NV92 336 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 DONSONQ9NYP3 566 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 KIAA1522Q9P206 1035 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-209ENST00000553949 DNAI1Q9UI46 699 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 SLC27A6Q9Y2P4 619 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 A0A0C4DFX4 3053 aa12.58□□□□□ -0.4
SHMT2-209ENST00000553949 MYO10Q9HD67 2058 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 ENC1O14682 589 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 DCLK1O15075 740 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 RHOCP08134 193 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 PYGMP11217 842 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 PABPC1P11940 636 aaKnown RBP12.57□□□□□ -0.4
SHMT2-209ENST00000553949 CD72P21854 359 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 CSKP41240 450 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 GRIA2P42262 883 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 CDKN2BP42772 138 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 OXCT1P55809 520 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 STARD6P59095 220 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 MESP2Q0VG99 397 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 PON2Q15165 354 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 PREPLQ4J6C6 727 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-209ENST00000553949 TMEM196Q5HYL7 178 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 DCAF12L1Q5VU92 463 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 TMCO3Q6UWJ1 677 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 ZNF852Q6ZMS4 543 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 ZNF783Q6ZMS7 281 aa12.57□□□□□ -0.4
SHMT2-209ENST00000553949 SUGP1Q8IWZ8 645 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms