RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 EDDM13A0A1B0GTR0 161 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 A0A1W2PP55 124 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 A0A1W2PPC4 97 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 TARSL2A2RTX5 802 aaKnown RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 TTC34A8MYJ7 566 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 E5RJQ4 531 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 H0Y8X5 98 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 CAPN9O14815 690 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 VILLO15195 856 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 MID1O15344 667 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 MED7O43513 233 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 DFNA5O60443 496 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 MOCS3O95396 460 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 MOCS2O96007 188 aaPredicted RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 APOEP02649 317 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 AFPP02771 609 aaKnown RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 KRT5P13647 590 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 TACR2P21452 398 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 CTSOP43234 321 aaPredicted RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 GRK6P43250 576 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 GALCP54803 685 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 RACK1P63244 317 aaKnown RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 ECT2LQ008S8 904 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 SFSWAPQ12872 951 aaKnown RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 PAK1Q13153 545 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 EIF4EBP2Q13542 120 aaPredicted RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 NCEH1Q6PIU2 408 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 LRSAM1Q6UWE0 723 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 MMAAQ8IVH4 418 aaKnown RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 LGI2Q8N0V4 545 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 GANCQ8TET4 914 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 ZNF606Q8WXB4 792 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 BTN2A3PQ96KV6 586 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 MED15Q96RN5 788 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 NEUROG2Q9H2A3 272 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 CCDC86Q9H6F5 360 aaKnown RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 TJP2Q9UDY2 1190 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 LHX6Q9UPM6 363 aa11.74□□□□□ -0.53
VPS28-214ENST00000531032 COL5A1P20908 1838 aaPredicted RBP11.74□□□□□ -0.53
VPS28-214ENST00000531032 NBEAQ8NFP9 2946 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 BIN1O00499 593 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 KCNK3O14649 394 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 TNFSF14O43557 240 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 LETM1O95202 739 aaPredicted RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 TRUB2O95900 331 aaKnown RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 GNA15P30679 374 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 STX17P56962 302 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 YWHAZP63104 245 aaKnown RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 PITX1P78337 314 aaPredicted RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 PDCLQ13371 301 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 SLC12A1Q13621 1099 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 ZC3H12AQ5D1E8 599 aaKnown RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 RAP1GAP2Q684P5 730 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 ENOSF1Q7L5Y1 443 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 ADAT2Q7Z6V5 191 aaKnown RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 CHSY1Q86X52 802 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 APCDD1Q8J025 514 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 AADATQ8N5Z0 425 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 OR2T34Q8NGX1 318 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 PTPRN2Q92932 1015 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 SLC6A18Q96N87 628 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 FAM129BQ96TA1 746 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 PRMT1Q99873 361 aaKnown RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 SRRTQ9BXP5 876 aaKnown RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 ACE2Q9BYF1 805 aaPredicted RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 THAP9Q9H5L6 903 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 EBF2Q9HAK2 575 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 UBE2TQ9NPD8 197 aaPredicted RBP11.73□□□□□ -0.53
VPS28-214ENST00000531032 SLCO3A1Q9UIG8 710 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 GPSM3Q9Y4H4 160 aa11.73□□□□□ -0.53
VPS28-214ENST00000531032 CELSR3Q9NYQ7 3312 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 A0A1B0GTQ1 180 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 FAM47DPA6NHR8 397 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 LRRC72A6NJI9 287 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 KCNU1A8MYU2 1149 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 F5H5T6 163 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 THAP12O43422 761 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 RNASEH2AO75792 299 aaKnown RBP11.72□□□□□ -0.53
VPS28-214ENST00000531032 ADH1BP00325 375 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 HOXB3P14651 431 aaPredicted RBP11.72□□□□□ -0.53
VPS28-214ENST00000531032 C5AR1P21730 350 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 SLC8A1P32418 973 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 CCR5P51681 352 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 ADPRHP54922 357 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 C21orf59P57076 290 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 KCNJ12Q14500 433 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 ELAVL3Q14576 367 aaKnown RBP11.72□□□□□ -0.53
VPS28-214ENST00000531032 INAVAQ3KP66 663 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 TTC39BQ5VTQ0 682 aaPredicted RBP11.72□□□□□ -0.53
VPS28-214ENST00000531032 RNF219Q5W0B1 726 aaPredicted RBP11.72□□□□□ -0.53
VPS28-214ENST00000531032 TRIM65Q6PJ69 517 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 GALNT15Q8N3T1 639 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 ATP6V0D2Q8N8Y2 350 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 RPL10LQ96L21 214 aaKnown RBP11.72□□□□□ -0.53
VPS28-214ENST00000531032 FAM81BQ96LP2 452 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 SLC2A13Q96QE2 648 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 OMDQ99983 421 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 ACP6Q9NPH0 428 aa11.72□□□□□ -0.53
VPS28-214ENST00000531032 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS28-214ENST00000531032 DKK4Q9UBT3 224 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms