RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 MAN2B1O00754 1011 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 FGF10O15520 208 aaPredicted RBP30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 RHOQP17081 205 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 FSCBQ5H9T9 825 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 ASTLQ6HA08 431 aaPredicted RBP30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 CXorf57Q6NSI4 855 aaKnown RBP30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 ZNF852Q6ZMS4 543 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 NLRP14Q86W24 1093 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 ZNF557Q8N988 423 aaPredicted RBP30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 TRIM58Q8NG06 486 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 FAM71BQ8TC56 605 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 TSC1Q92574 1164 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 TRIM44Q96DX7 344 aaPredicted RBP30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 CSPG4P5Q96PW8 444 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 PNKPQ96T60 521 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 FBRSL1Q9HCM7 1045 aaKnown RBP30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 ABCB8Q9NUT2 735 aa30.47■■■□□ 2.47
LIMCH1-211ENST00000509638 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 PI4K2BG5E9Z4 385 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 DAPK3O43293 454 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 HLA-FP30511 346 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 ZNF177Q13360 481 aaPredicted RBP30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 PDK2Q15119 407 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 FIBINQ8TAL6 211 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 EXOC4Q96A65 974 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 COL25A1Q9BXS0 654 aaPredicted RBP30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 CATSPERBQ9H7T0 1116 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 TMEM248Q9NWD8 314 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 RCOR3Q9P2K3 495 aaPredicted RBP30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 CUL9Q8IWT3 2517 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 CHD5Q8TDI0 1954 aa30.46■■■□□ 2.47
LIMCH1-211ENST00000509638 CCDC66A2RUB6 948 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 GOLGA6L9A6NEM1 432 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 CISD3P0C7P0 127 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 CTNNA2P26232 953 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 OR1E1P30953 314 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 GALK1P51570 392 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 STARD6P59095 220 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 MMRN1Q13201 1228 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 DPYSQ14117 519 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 ODF2Q5BJF6 829 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 MAP7D3Q8IWC1 876 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 KATNAL2Q8IYT4 538 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 RTL3Q8N8U3 475 aaKnown RBP30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 TERB1Q8NA31 727 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 ZNF670Q9BS34 389 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 TBC1D17Q9HA65 648 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 SLC27A6Q9Y2P4 619 aa30.45■■■□□ 2.47
LIMCH1-211ENST00000509638 KDELR1P24390 212 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 CD70P32970 193 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 HCAR3P49019 387 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 LMAN2Q12907 356 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 TMEM196Q5HYL7 178 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 TRIM67Q6ZTA4 783 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 ANKS1BQ7Z6G8 1248 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 NDFIP2Q9NV92 336 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 GGA2Q9UJY4 613 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 NDRG2Q9UN36 371 aaKnown RBP30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 TBC1D30Q9Y2I9 924 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 PCDHA3Q9Y5H8 950 aa30.45■■■□□ 2.46
LIMCH1-211ENST00000509638 KAT7O95251 611 aa30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 PREPLQ4J6C6 727 aaPredicted RBP30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 HS1BP3Q53T59 392 aa30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 SFTPA1Q8IWL2 248 aa30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 SUGP1Q8IWZ8 645 aaKnown RBP30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 C17orf53Q8N3J3 647 aaPredicted RBP30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 OR52K2Q8NGK3 314 aa30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 FOXQ1Q9C009 403 aa30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 DNAI1Q9UI46 699 aa30.44■■■□□ 2.46
LIMCH1-211ENST00000509638 C3orf70A6NLC5 250 aaPredicted RBP30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 MIF4GDA9UHW6 222 aaKnown RBP30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 APODP05090 189 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 RHOCP08134 193 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 ERCC2P18074 760 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 IL4RP24394 825 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 MAPKAPK2P49137 400 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 DNA2P51530 1060 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 GRSF1Q12849 480 aaKnown RBP eCLIP30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 GEN1Q17RS7 908 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 C6orf118Q5T5N4 469 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 FSTL4Q6MZW2 842 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 SETD3Q86TU7 594 aaPredicted RBP30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 DDX51Q8N8A6 666 aaKnown RBP eCLIP30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 ALG3Q92685 438 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 RNF25Q96BH1 459 aaPredicted RBP30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 RETREG1Q9H6L5 497 aa30.43■■■□□ 2.46
LIMCH1-211ENST00000509638 KANSL1LA0AUZ9 987 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 TNFRSF10AO00220 468 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 PABPC1P11940 636 aaKnown RBP30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 GRIA2P42262 883 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 UBXN2BQ14CS0 331 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 UBL4BQ8N7F7 174 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 HES6Q96HZ4 224 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 LMLNQ96KR4 655 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 LTB4R2Q9NPC1 389 aa30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 MRPS17Q9Y2R5 130 aaKnown RBP30.42■■■□□ 2.46
LIMCH1-211ENST00000509638 WASH4PA8MWX3 477 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 KIF5CO60282 957 aa30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 TARSP26639 723 aaKnown RBP30.41■■■□□ 2.46
LIMCH1-211ENST00000509638 CSKP41240 450 aa30.41■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms