RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 RFX8Q6ZV50 586 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ANKS1BQ7Z6G8 1248 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 C12orf40Q86WS4 652 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 AHI1Q8N157 1196 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 DCAF4L2Q8NA75 395 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SPC24Q8NBT2 197 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 ARHGEF2Q92974 986 aaKnown RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 SHDQ96IW2 340 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CSPG4P5Q96PW8 444 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 LINC00597Q9H2U6 94 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 C11orf16Q9NQ32 467 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CWC15Q9P013 229 aaKnown RBP7.23□□□□□ -1.25
LIMA1-202ENST00000394943 LIMD1Q9UGP4 676 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 DUSP10Q9Y6W6 482 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 XIRP2A4UGR9 3374 aa7.23□□□□□ -1.25
LIMA1-202ENST00000394943 CAPN9O14815 690 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 KDELR3O43731 214 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ZNF821O75541 412 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 RNF8O76064 485 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 LRIG2O94898 1065 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ALADP13716 330 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 NR1H3Q13133 447 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 PRKD1Q15139 912 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 CLUL1Q15846 466 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 HADHQ16836 314 aaKnown RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 INO80DQ53TQ3 878 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 BBS12Q6ZW61 710 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 DNAAF5Q86Y56 855 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 TMEM25Q86YD3 366 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 FRS2Q8WU20 508 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 RSAD2Q8WXG1 361 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 SLCO2A1Q92959 643 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 RNF157Q96PX1 679 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 TLR10Q9BXR5 811 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 SMG9Q9H0W8 520 aaKnown RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 LTB4R2Q9NPC1 389 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 INTS6Q9UL03 887 aaKnown RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 GOLGA8SH3BPF8 625 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 FANCGO15287 622 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 DCXO43602 365 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 NARSO43776 548 aaKnown RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ZFXP17010 805 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ETFBP38117 255 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 SULT2A1Q06520 285 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 EFHC2Q5JST6 749 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 TMEM215Q68D42 235 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 DCUN1D2Q6PH85 259 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 RASSF3Q86WH2 238 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 DENND1CQ8IV53 801 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 PLD5Q8N7P1 536 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 PJA1Q8NG27 643 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 HDAC11Q96DB2 347 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 RBM41Q96IZ5 413 aaKnown RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 UHRF1Q96T88 793 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 TRPC7Q9HCX4 862 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ARHGEF4Q9NR80 690 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ABCB8Q9NUT2 735 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 KIAA1522Q9P206 1035 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 CTTNBP2NLQ9P2B4 639 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 OR12D3Q9UGF7 316 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 PYCARDQ9ULZ3 195 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 HACD1B0YJ81 288 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 F5H5T6 163 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 PIK3R2O00459 728 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 NCAM2O15394 837 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 IFI35P80217 286 aaPredicted RBP7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ANKRD20A8PQ5CZ79 823 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 LY6G5CQ5SRR4 150 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 PCDH19Q8TAB3 1148 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 ACDQ96AP0 544 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 FAM149B1Q96BN6 582 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 PNKPQ96T60 521 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 CATSPERBQ9H7T0 1116 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 JRKLQ9Y4A0 524 aa7.22□□□□□ -1.25
LIMA1-202ENST00000394943 GOLGA6L7A0A1B0GV03 622 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 KANSL1LA0AUZ9 987 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 TNFRSF10AO00220 468 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 GRAP2O75791 330 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 TYRP14679 529 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 GDI1P31150 447 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 IRAK1P51617 712 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 SERINC3Q13530 473 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 FUT11Q495W5 492 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 TERB1Q8NA31 727 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 OR52K2Q8NGK3 314 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 ACTRT1Q8TDG2 376 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 XPO6Q96QU8 1125 aaKnown RBP7.21□□□□□ -1.25
LIMA1-202ENST00000394943 ATP8A1Q9Y2Q0 1164 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 PPIL1Q9Y3C6 166 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 NEU2Q9Y3R4 380 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 WNT6Q9Y6F9 365 aa7.21□□□□□ -1.25
LIMA1-202ENST00000394943 TARSL2A2RTX5 802 aaKnown RBP7.21□□□□□ -1.26
LIMA1-202ENST00000394943 ZSCAN5CA6NGD5 496 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-202ENST00000394943 H3BRJ5 948 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 NRDCO43847 1150 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 PRPSAP2O60256 369 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 GSRP00390 522 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 AOC1P19801 751 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 CR2P20023 1033 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms