RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 CD48P09326 243 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 TYMPP19971 482 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 IRX1P78414 480 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 TFDP3Q5H9I0 405 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CES3Q6UWW8 571 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 SLC13A5Q86YT5 568 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CDKL3Q8IVW4 592 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CMTM8Q8IZV2 173 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 FMO2Q99518 471 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 DUS2Q9NX74 493 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 WDR91A4D1P6 747 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 C2orf78A6NCI8 922 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CFAP73A6NFT4 308 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 C1RP00736 705 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CHRNB2P17787 502 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 WARSP23381 471 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ELF3P78545 371 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 TCEAL5Q5H9L2 206 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 HGSNATQ68CP4 663 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 TRIM68Q6AZZ1 485 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 XYLT1Q86Y38 959 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 OR7D4Q8NG98 312 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ZSCAN18Q8TBC5 510 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 TFB1MQ8WVM0 346 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 LINC01599Q8WXQ3 324 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 SUSD6Q92537 303 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 THOC1Q96FV9 657 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ZDHHC6Q9H6R6 413 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 MLXIPLQ9NP71 852 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 INTS9Q9NV88 658 aaKnown RBP10.57□□□□□ -0.72
COL6A3-205ENST00000392004 CHMP2BQ9UQN3 213 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 COQ4Q9Y3A0 265 aa10.57□□□□□ -0.72
COL6A3-205ENST00000392004 ACADMP11310 421 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 POLR2EP19388 210 aaKnown RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 STARD3Q14849 445 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 ASTE1Q2TB18 679 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 STXBP5Q5T5C0 1151 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 MARC1Q5VT66 337 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 KIRREL3Q8IZU9 778 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CCDC185Q8N715 623 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 MDM1Q8TC05 714 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CASP10Q92851 521 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 ELAC2Q9BQ52 826 aaKnown RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 NDFIP2Q9NV92 336 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 NOP53Q9NZM5 478 aaKnown RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 DEC1Q9P2X7 70 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 NUMA1Q14980 2115 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CES2O00748 559 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 ETS1P14921 441 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 TCF4P15884 667 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 ZFXP17010 805 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CHKAP35790 457 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CDK7P50613 346 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 DAOAP59103 153 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CCDC38Q502W7 563 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CROCCP2Q86T23 111 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 NT5DC3Q86UY8 548 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 NDUFAF2Q8N183 169 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 MAGEB5Q9BZ81 275 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 TNKS2Q9H2K2 1166 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 OLA1Q9NTK5 396 aaKnown RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 C5orf60A6NFR6 353 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CRCPO75575 148 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 TFE3P19532 575 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 DRD4P21917 467 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 ZNF143P52747 638 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 USP46P62068 366 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 NSUN2Q08J23 767 aaKnown RBP eCLIP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 RETSATQ6NUM9 610 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 CMTR2Q8IYT2 770 aaKnown RBP10.56□□□□□ -0.72
COL6A3-205ENST00000392004 LPCAT1Q8NF37 534 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 RIPOR3Q96MK2 946 aa10.56□□□□□ -0.72
COL6A3-205ENST00000392004 GSTA1P08263 222 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 PROZP22891 400 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 PRKCIP41743 596 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CREMQ03060 361 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 POU6F1Q14863 301 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 TMED2Q15363 201 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 TTC7BQ86TV6 843 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ARMC2Q8NEN0 867 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ACTRT1Q8TDG2 376 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CCT6BQ92526 530 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 FAM129AQ9BZQ8 928 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 UNKQ9C0B0 810 aaKnown RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 KIAA1551Q9HCM1 1747 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 AHCTF1Q8WYP5 2266 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CACNA1HO95180 2353 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 TTC24A2A3L6 582 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 MGRN1O60291 552 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 B4GALT3O60512 393 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 RBL1P28749 1068 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CACNA2D1P54289 1103 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 TXNRD3NBQ6F5E7 133 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 SLC39A11Q8N1S5 342 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 PDZD8Q8NEN9 1154 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ATL2Q8NHH9 583 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 ARHGEF4Q9NR80 690 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 CHST7Q9NS84 486 aa10.55□□□□□ -0.72
COL6A3-205ENST00000392004 SPATS2LQ9NUQ6 558 aaKnown RBP10.55□□□□□ -0.72
COL6A3-205ENST00000392004 XPO7Q9UIA9 1087 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms