RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 TNS4Q8IZW8 715 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 TDRD5Q8NAT2 981 aaKnown RBP21.65■■□□□ 1.06
UPF3A-202ENST00000375299 KYQ8NBH2 561 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 COLGALT1Q8NBJ5 622 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 ZFP28Q8NHY6 868 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 HPDLQ96IR7 371 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 NAT9Q9BTE0 207 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 EIF2B3Q9NR50 452 aaKnown RBP21.65■■□□□ 1.06
UPF3A-202ENST00000375299 SYBUQ9NX95 663 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 KIAA1257Q9ULG3 409 aa21.65■■□□□ 1.06
UPF3A-202ENST00000375299 MYO18AQ92614 2054 aaKnown RBP21.64■■□□□ 1.06
UPF3A-202ENST00000375299 CD1EP15812 388 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 THOP1P52888 689 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 APOFQ13790 326 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 ZNF423Q2M1K9 1284 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 USP41Q3LFD5 358 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 PRAMEF18Q5VWM3 479 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 NCBP2-AS2Q69YL0 99 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 HACE1Q8IYU2 909 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 ALDH16A1Q8IZ83 802 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 DSELQ8IZU8 1212 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 PLD6Q8N2A8 252 aaKnown RBP21.64■■□□□ 1.05
UPF3A-202ENST00000375299 DCLK2Q8N568 766 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 ISL2Q96A47 359 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 CPNE1Q99829 537 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 SENP6Q9GZR1 1112 aaPredicted RBP21.64■■□□□ 1.05
UPF3A-202ENST00000375299 CIDEBQ9UHD4 219 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 BCAP29Q9UHQ4 241 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 VPS28Q9UK41 221 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 TNFSF13BQ9Y275 285 aa21.64■■□□□ 1.05
UPF3A-202ENST00000375299 IGKV6-21A0A0C4DH24 114 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 RGSL1A5PLK6 1076 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 ERVK-10P10266 1014 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 TFE3P19532 575 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-202ENST00000375299 SERPINB8P50452 374 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 DDI1Q8WTU0 396 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 SEPT1Q8WYJ6 367 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 CNDP1Q96KN2 507 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 CSPG4P5Q96PW8 444 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 PRPF18Q99633 342 aaKnown RBP21.63■■□□□ 1.05
UPF3A-202ENST00000375299 FERMT1Q9BQL6 677 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 MAGEB5Q9BZ81 275 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 COPS7BQ9H9Q2 264 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-202ENST00000375299 ADAM28Q9UKQ2 775 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 AP4E1Q9UPM8 1137 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 GNEQ9Y223 722 aaKnown RBP21.63■■□□□ 1.05
UPF3A-202ENST00000375299 C19orf81C9J6K1 198 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 G3V2L1 256 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 DGKIO75912 1065 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 XRCC1P18887 633 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-202ENST00000375299 GK3PQ14409 553 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 PIGGQ5H8A4 983 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 PPM1LQ5SGD2 360 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 BSPRYQ5W0U4 402 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 KLC3Q6P597 504 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 C12orf29Q8N999 325 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 CERS2Q96G23 380 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 KCTD15Q96SI1 283 aaPredicted RBP21.63■■□□□ 1.05
UPF3A-202ENST00000375299 CDRT15Q96T59 188 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 NT5C1AQ9BXI3 368 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 MAF1Q9H063 256 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 GMEB1Q9Y692 573 aa21.63■■□□□ 1.05
UPF3A-202ENST00000375299 ARHGAP10A1A4S6 786 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 KPNA7A9QM74 516 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 HACD1B0YJ81 288 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 FAM58BPP0C7Q3 252 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 HSPA13P48723 471 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 RP9Q8TA86 221 aaKnown RBP21.62■■□□□ 1.05
UPF3A-202ENST00000375299 PGBD4Q96DM1 585 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 SLC4A5Q9BY07 1137 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 DDX18Q9NVP1 670 aaKnown RBP21.62■■□□□ 1.05
UPF3A-202ENST00000375299 MFHAS1Q9Y4C4 1052 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 GJB1P08034 283 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 STAG3L1P0CL83 205 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 MLH1P40692 756 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 ATXN1P54253 815 aaKnown RBP21.62■■□□□ 1.05
UPF3A-202ENST00000375299 OLFML2BQ68BL8 750 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 IYDQ6PHW0 289 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 SCUBE3Q8IX30 993 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 LILRA2Q8N149 483 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 AGR3Q8TD06 166 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 KBTBD7Q8WVZ9 684 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 SREK1Q8WXA9 508 aaKnown RBP21.62■■□□□ 1.05
UPF3A-202ENST00000375299 RBBP8Q99708 897 aa21.62■■□□□ 1.05
UPF3A-202ENST00000375299 GOLGA8QA0A0J9YX86 632 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 GOLGA8OA6NCC3 632 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 SPDYE16A6NNV3 312 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-202ENST00000375299 ZBTB42B2RXF5 422 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 GOLGA8NF8WBI6 632 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 PAPSS1O43252 624 aaPredicted RBP21.61■■□□□ 1.05
UPF3A-202ENST00000375299 POLBP06746 335 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 CREB5Q02930 508 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 SPANXN3Q5MJ09 141 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 BORAQ6PGQ7 559 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 CES3Q6UWW8 571 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 TTC30AQ86WT1 665 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 AFG1LQ8WV93 481 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 LZICQ8WZA0 190 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 DLG3Q92796 817 aa21.61■■□□□ 1.05
UPF3A-202ENST00000375299 TIMMDC1Q9NPL8 285 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms