RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 ATP6V0D2Q8N8Y2 350 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 SETD9Q8NE22 299 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 ACMSDQ8TDX5 336 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 ARHGAP23Q9P227 1491 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 MEIS2O14770 477 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 SLC25A27O95847 323 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 ALOX12P18054 663 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 RPL7AP62424 266 aaKnown RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 NOMO3P69849 1222 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 BBS12Q6ZW61 710 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 FNDC5Q8NAU1 212 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 OSBPL11Q9BXB4 747 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 CDHR5Q9HBB8 845 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 NT5MQ9NPB1 228 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 RBM22Q9NW64 420 aaKnown RBP eCLIP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 CYB561D2O14569 222 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 TRUB2O95900 331 aaKnown RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 TKTL1P51854 596 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 EVX2Q03828 476 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 MSLNQ13421 630 aaPredicted RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 C15orf59Q2T9L4 293 aaPredicted RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 ZNF484Q5JVG2 852 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 HYIQ5T013 277 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DCP1BQ8IZD4 617 aaKnown RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 RBM15BQ8NDT2 890 aaKnown RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 ITFG1Q8TB96 612 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 GANCQ8TET4 914 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 CLPTM1LQ96KA5 538 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 CACNA2D2Q9NY47 1150 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 R3HDM2Q9Y2K5 976 aaKnown RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 TSC22D2O75157 780 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 TM7SF2O76062 418 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 ATG7O95352 703 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 VTNP04004 478 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 SLC2A4P14672 509 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 TTLL9Q3SXZ7 439 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PRAMEF18Q5VWM3 479 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 APTXQ7Z2E3 356 aaKnown RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 C8orf59Q8N0T1 100 aaPredicted RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 RCN3Q96D15 328 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 RPRD1AQ96P16 312 aaPredicted RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 SEPT5Q99719 369 aaPredicted RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 POLR1BQ9H9Y6 1135 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PARVBQ9HBI1 364 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 SPASTQ9UBP0 616 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 WBP4O75554 376 aaKnown RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 POU1F1P28069 291 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 TRAF3Q13114 568 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 ABRAXAS1Q6UWZ7 409 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 C11orf74Q86VG3 221 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 A0A087X1B8 175 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 FAM95CA0A1B0GW59 222 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 VEPH1Q14D04 833 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 ZPBP2Q6X784 338 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 ZNF554Q86TJ5 538 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 FAM9CQ8IZT9 166 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 APOL4Q9BPW4 351 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 MYOZ2Q9NPC6 264 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 SPAG4Q9NPE6 437 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 ADAM28Q9UKQ2 775 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PRPF19Q9UMS4 504 aaKnown RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 COPG1Q9Y678 874 aaKnown RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 RPTORQ8N122 1335 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 AVILO75366 819 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 TADA2AO75478 443 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 GRIA4P48058 902 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 TP53BP2Q13625 1128 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 SQLEQ14534 574 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 TRIP4Q15650 581 aaPredicted RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PQLC1Q8N2U9 271 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 FBXO39Q8N4B4 442 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PRKD2Q9BZL6 878 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 RIBC2Q9H4K1 309 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 ARHGEF3Q9NR81 526 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PDGFCQ9NRA1 345 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 TCHHQ07283 1943 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 A0A0A0MRY4 1105 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 WTIPA6NIX2 430 aaPredicted RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 SERPIND1P05546 499 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PWP1Q13610 501 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 DDX39BQ13838 428 aaKnown RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 KHDC1Q4VXA5 237 aaKnown RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 C10orf107Q8IVU9 208 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 GIPC3Q8TF64 312 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 SPATA13Q96N96 652 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 RGS18Q9NS28 235 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 PNPOQ9NVS9 261 aa16.22■□□□□ 0.19
COL17A1-202ENST00000369733 FARP1Q9Y4F1 1045 aaPredicted RBP16.22■□□□□ 0.19
COL17A1-202ENST00000369733 F8W810 466 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 VPS4BO75351 444 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 CPSF4O95639 269 aaKnown RBP16.21■□□□□ 0.19
COL17A1-202ENST00000369733 PSMB4P28070 264 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 RRM2P31350 389 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 ARHGAP17Q68EM7 881 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 FAM45BPQ6NSW5 357 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 ANKS3Q6ZW76 656 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 FAM126BQ8IXS8 530 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 MYO1HQ8N1T3 1032 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 CERS2Q96G23 380 aa16.21■□□□□ 0.19
COL17A1-202ENST00000369733 COQ7Q99807 217 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 152.7 ms