RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 TRMT13Q9NUP7 481 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 TAS2R1Q9NYW7 299 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 TRIM49D1C9J1S8 452 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 FAM72CH0Y354 149 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 PQBP1O60828 265 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 GCAP28676 217 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 GEMIN4P57678 1058 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 FAM187BQ17R55 369 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 FAM72AQ5TYM5 149 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 FAM72DQ6L9T8 149 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 KIAA1841Q6NSI8 718 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 PPP1R2P3Q6NXS1 205 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 GPRIN1Q7Z2K8 1008 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 FAM72BQ86X60 149 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 RIBC1Q8N443 379 aaPredicted RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 LINC01465Q8N7H1 131 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 PNPLA1Q8N8W4 532 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 SLCO2A1Q92959 643 aa14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 KCTD15Q96SI1 283 aaPredicted RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 WDR83Q9BRX9 315 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 DNAAF2Q9NVR5 837 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 DRG1Q9Y295 367 aaKnown RBP14.88□□□□□ -0.03
SHROOM1-208ENST00000617339 ALOX15BO15296 676 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 OR6B1O95007 311 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 CTGFP29279 349 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 ZCCHC23Q6ZST2 131 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 POLNQ7Z5Q5 900 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 DNAAF3Q8N9W5 541 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 TMEM209Q96SK2 561 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 THTPAQ9BU02 230 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 SPATA16Q9BXB7 569 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 TMEM120AQ9BXJ8 343 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 RABGEF1Q9UJ41 708 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 GNEQ9Y223 722 aaKnown RBP14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 SP3Q02447 781 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 METTL23Q86XA0 190 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 IFNL1Q8IU54 200 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 ANKRD52Q8NB46 1076 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 SCAMP5Q8TAC9 235 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 PGBD4Q96DM1 585 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 TRIM55Q9BYV6 548 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 ATXN3LQ9H3M9 355 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 KANSL3Q9P2N6 904 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 PSMC3IPQ9P2W1 217 aaPredicted RBP14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 MORF4L1Q9UBU8 362 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 NUP205Q92621 2012 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 PARP14Q460N5 1801 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 PTGESO14684 152 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 LPXNO60711 386 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 TPP2P29144 1249 aaPredicted RBP14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 BCAT1P54687 386 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 YWHAZP63104 245 aaKnown RBP14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 KIAA0319Q5VV43 1072 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 C16orf46Q6P387 395 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 NAT8LQ8N9F0 302 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 HIC2Q96JB3 615 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 CENPKQ9BS16 269 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 ARID2Q68CP9 1835 aa14.87□□□□□ -0.03
SHROOM1-208ENST00000617339 WDR27A2RRH5 827 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 SCAMP3O14828 347 aaKnown RBP14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 AMHP03971 560 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 THP07101 528 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 HMBSP08397 361 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 PBX3P40426 434 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 FKBP1BP68106 108 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 SAPCD2Q86UD0 394 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 ALYREFQ86V81 257 aaKnown RBP14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 DENND1AQ8TEH3 1009 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 TNIP3Q96KP6 325 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 ADAM2Q99965 735 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 KLC2Q9H0B6 622 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 TMEM30AQ9NV96 361 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 FNDC3AQ9Y2H6 1198 aaKnown RBP14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 ASGR1P07306 291 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 INCA1Q0VD86 236 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 NOMO1Q15155 1222 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 LIN52Q52LA3 116 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 CYP4V2Q6ZWL3 525 aaPredicted RBP14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 CSPG4P5Q96PW8 444 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 EBF3Q9H4W6 596 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 KLHL8Q9P2G9 620 aaPredicted RBP14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 PPME1Q9Y570 386 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 SMIM35A0A1B0GVV1 85 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 RNASEH1O60930 286 aaKnown RBP14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 ZWINTO95229 277 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 PGM3O95394 542 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 CD4P01730 458 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 ITGB1P05556 798 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 HOXD10P28358 340 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 CTC1Q2NKJ3 1217 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 CMPK2Q5EBM0 449 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 UBXN11Q5T124 520 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 IL31Q6EBC2 164 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 RNF180Q86T96 592 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 NIPA2Q8N8Q9 360 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 PCED1BQ96HM7 432 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 MPP4Q96JB8 637 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 SERAC1Q96JX3 654 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 CAPNS2Q96L46 248 aa14.86□□□□□ -0.03
SHROOM1-208ENST00000617339 APBA2Q99767 749 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms