RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 DENND1AQ8TEH3 1009 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ATL1Q8WXF7 558 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC5A5Q92911 643 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 MYLPFQ96A32 169 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 MED8Q96G25 268 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 HSFY1Q96LI6 401 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FBXL18Q96ME1 805 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CBWD1Q9BRT8 395 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM167BQ9BTA0 163 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TRIM55Q9BYV6 548 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ELOVL6Q9H5J4 265 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ACTR8Q9H981 624 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 EPB41L5Q9HCM4 733 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 XAB2Q9HCS7 855 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 INTS9Q9NV88 658 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 INTS10Q9NVR2 710 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 KIF17Q9P2E2 1029 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PADI4Q9UM07 663 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CDC14AQ9UNH5 594 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PPP2R2CQ9Y2T4 447 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 C2CD2Q9Y426 696 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CACNA1GO43497 2377 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PDE4DIPQ5VU43 2346 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 SYCE1LA8MT33 242 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 H3BNH8 94 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 H3BQ06 376 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 KHNYNO15037 678 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 FOXN1O15353 648 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FGF10O15520 208 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 SLC25A14O95258 325 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 LSM8O95777 96 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 TRUB2O95900 331 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 CFHP08603 1231 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PAEPP09466 180 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CYP11B1P15538 503 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 NPR3P17342 541 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PTPN7P35236 360 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RAP1GAPP47736 663 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ALDH9A1P49189 494 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PDX1P52945 283 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TAF10Q12962 218 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 SMAD1Q15797 465 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 TSNAXIP1Q2TAA8 658 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FBXO43Q4G163 708 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 MIIPQ5JXC2 388 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CACHD1Q5VU97 1274 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TTC23Q5W5X9 447 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PTCRAQ6ISU1 281 aaPredicted RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 MFSD5Q6N075 450 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 LCA5Q86VQ0 697 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FAM129CQ86XR2 697 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 CCNJLQ8IV13 435 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 DEFB106AQ8N104 65 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 STK40Q8N2I9 435 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RNF10Q8N5U6 811 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 ATAD1Q8NBU5 361 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 USP7Q93009 1102 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 KLHDC7BQ96G42 594 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 C12orf42Q96LP6 360 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 FMO2Q99518 471 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RTP3Q9BQQ7 232 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TBCDQ9BTW9 1192 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TUBB6Q9BUF5 446 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 RUSC1Q9BVN2 902 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TTLL2Q9BWV7 592 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 LHX5Q9H2C1 402 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 YY1AP1Q9H869 796 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 PRDM16Q9HAZ2 1276 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 TRPC4Q9UBN4 977 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ZC3H7BQ9UGR2 993 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 GTF2IRD1Q9UHL9 959 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 GABRQQ9UN88 632 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 EIF3LQ9Y262 564 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 UBIAD1Q9Y5Z9 338 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 ALG6Q9Y672 507 aa3□□□□□ -1.93
SMCHD1-203ENST00000577880 DYNC1LI1Q9Y6G9 523 aaKnown RBP3□□□□□ -1.93
SMCHD1-203ENST00000577880 ZNF609O15014 1411 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 A8MX80 341 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TMX2-CTNND1H3BSU7 103 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FOXP2O15409 715 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 AP5Z1O43299 807 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 MED24O75448 989 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CLDN11O75508 207 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 SKAP2O75563 359 aaPredicted RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 NDUFA10O95299 355 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 STAU1O95793 577 aaKnown RBP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 BAG2O95816 211 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 TIMP1P01033 207 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 KRT6AP02538 564 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 KRT6BP04259 564 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 FYNP06241 537 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CYP3A4P08684 503 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 HNRNPA1P09651 372 aaKnown RBP eCLIP2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 MMP13P45452 471 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 CXCL12P48061 93 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 KCNJ5P48544 419 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 KRT6CP48668 564 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 SKOR1P84550 965 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 PLGLB1Q02325 96 aa2.99□□□□□ -1.93
SMCHD1-203ENST00000577880 RPL6Q02878 288 aaKnown RBP2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms