RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ZNF528Q3MIS6 628 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 EFHC2Q5JST6 749 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 EOGTQ5NDL2 527 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 SH3PXD2AQ5TCZ1 1133 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 SYT13Q7L8C5 426 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 KIAA0907Q7Z7F0 614 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 SLFN11Q7Z7L1 901 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 DNAAF5Q86Y56 855 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 PSTKQ8IV42 348 aaKnown RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 ZNF683Q8IZ20 524 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 NIPA2Q8N8Q9 360 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 RPLP0P6Q8NHW5 317 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 NUP85Q9BW27 656 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 FAM126AQ9BYI3 521 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 SIK2Q9H0K1 926 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 ABCB8Q9NUT2 735 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 SPTLC3Q9NUV7 552 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 PPARGC1AQ9UBK2 798 aaKnown RBP13.42□□□□□ -0.26
NEDD8-208ENST00000560427 IP6K2Q9UHH9 426 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 GGA2Q9UJY4 613 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 VANGL2Q9ULK5 521 aa13.42□□□□□ -0.26
NEDD8-208ENST00000560427 DRGXA6NNA5 263 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 PRRT4C9JH25 899 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 E9PAM4 449 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 H0Y626 953 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 MYO1FO00160 1098 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 TRIM24O15164 1050 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 MOCS3O95396 460 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 LCA5LO95447 670 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 HNRNPLP14866 589 aaKnown RBP eCLIP13.41□□□□□ -0.26
NEDD8-208ENST00000560427 HTR7P34969 479 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 ZNF135P52742 658 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-208ENST00000560427 GSDMDP57764 484 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 ZNF252P-AS1Q0IIN9 211 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 ANGPT1Q15389 498 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 GEN1Q17RS7 908 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 RHOT2Q8IXI1 618 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 CCAR2Q8N163 923 aaKnown RBP13.41□□□□□ -0.26
NEDD8-208ENST00000560427 CFAP52Q8N1V2 620 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 CCDC185Q8N715 623 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 ZNF513Q8N8E2 541 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-208ENST00000560427 ZNF564Q8TBZ8 553 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-208ENST00000560427 MYEOVQ96EZ4 313 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 ZYG11BQ9C0D3 744 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 KIAA1522Q9P206 1035 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-208ENST00000560427 STIM2Q9P246 746 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 ANAPC7Q9UJX3 599 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 CLEC4EQ9ULY5 219 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 MMP17Q9ULZ9 603 aa13.41□□□□□ -0.26
NEDD8-208ENST00000560427 LRCH4O75427 683 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 IPO7O95373 1038 aaKnown RBP13.4□□□□□ -0.26
NEDD8-208ENST00000560427 ASLP04424 464 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 ATP5BP06576 529 aaKnown RBP13.4□□□□□ -0.26
NEDD8-208ENST00000560427 L1CAMP32004 1257 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 NRLP54845 237 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 SEC13P55735 322 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 TCEAL1Q15170 157 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 SPA17Q15506 151 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 C2orf27AQ580R0 203 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 C6orf118Q5T5N4 469 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 MANEALQ5VSG8 457 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 SDE2Q6IQ49 451 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 SCYL2Q6P3W7 929 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 ZNF783Q6ZMS7 281 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 SETD3Q86TU7 594 aaPredicted RBP13.4□□□□□ -0.26
NEDD8-208ENST00000560427 CARNMT1Q8N4J0 409 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 CAMKK1Q8N5S9 505 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 IL17RCQ8NAC3 791 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 PRSS33Q8NF86 280 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 WFDC5Q8TCV5 224 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 IGSF8Q969P0 613 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 ARHGEF26Q96DR7 871 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 LMLNQ96KR4 655 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 ELOVL2Q9NXB9 296 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 CTTNBP2NLQ9P2B4 639 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 OR12D3Q9UGF7 316 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 FZD10Q9ULW2 581 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 SLC8A2Q9UPR5 921 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 TBC1D30Q9Y2I9 924 aa13.4□□□□□ -0.26
NEDD8-208ENST00000560427 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 CCDC163A0A0D9SF12 145 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 GOLGA6L3A6NEY3 463 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 PRPSAP2O60256 369 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 MTA2O94776 668 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 KLF8O95600 359 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 POLR2EP19388 210 aaKnown RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 NTSR1P30989 418 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 HOXC13P31276 330 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 CD70P32970 193 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 TIE1P35590 1138 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 GGCXP38435 758 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 DGKEP52429 567 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 PLK1P53350 603 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 SATB1Q01826 763 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 SULT2A1Q06520 285 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 TCF15Q12870 199 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 LMAN2Q12907 356 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 ZNF177Q13360 481 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-208ENST00000560427 ENPP2Q13822 863 aa13.39□□□□□ -0.27
NEDD8-208ENST00000560427 PLEKHG6Q3KR16 790 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms