RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CHSY1Q86X52 802 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 MFN1Q8IWA4 741 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 PGBD3Q8N328 593 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 CARNMT1Q8N4J0 409 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 ZNF557Q8N988 423 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 PGAP3Q96FM1 320 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 MYO19Q96H55 970 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 SPACA7Q96KW9 195 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 PCMTD1Q96MG8 357 aaPredicted RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 MKRN2Q9H000 416 aaKnown RBP10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 SMOC1Q9H4F8 434 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 CD93Q9NPY3 652 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 PIGVQ9NUD9 493 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 RRN3Q9NYV6 651 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 COX16Q9P0S2 106 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 SLC12A6Q9UHW9 1150 aa10.63□□□□□ -0.71
CCDC88C-206ENST00000553437 ANKRD11Q6UB99 2663 aaPredicted RBP10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 IGHV1OR15-9A0A0B4J2B8 117 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 SYCE3A1L190 88 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 F5H5T6 163 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 GOLGA8SH3BPF8 625 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 GDF9O60383 454 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 ZNF217O75362 1048 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 PAGE1O75459 146 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 ADCY5O95622 1261 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 EPHX1P07099 455 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 DLDP09622 509 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 HLA-EP13747 358 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 ABCB4P21439 1286 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 CSKP41240 450 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 PTGER3P43115 390 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 IRAK1P51617 712 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 COPAP53621 1224 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 CREB5Q02930 508 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 CAMK2GQ13555 558 aaPredicted RBP10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 AUHQ13825 339 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 STARD3Q14849 445 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 SF3A2Q15428 464 aaKnown RBP10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 SLC25A52Q3SY17 297 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 C5orf22Q49AR2 442 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 PITRM1Q5JRX3 1037 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 SPDYCQ5MJ68 293 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 ARTNQ5T4W7 220 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 SERPINA13PQ6UXR4 307 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 TRIM72Q6ZMU5 477 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 ARCQ7LC44 396 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 C14orf80Q86SX3 495 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 TMEFF1Q8IYR6 380 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 SLC30A5Q8TAD4 765 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 BAP1Q92560 729 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 RNF34Q969K3 372 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 IGSF8Q969P0 613 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 MRGPRX3Q96LB0 322 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 NAP1L5Q96NT1 182 aaPredicted RBP10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 TBCBQ99426 244 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 SYT11Q9BT88 431 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 VPS45Q9NRW7 570 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 RXFP3Q9NSD7 469 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 ARHGEF38Q9NXL2 777 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 PLA2G4CQ9UP65 541 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 HS3ST4Q9Y661 456 aa10.62□□□□□ -0.71
CCDC88C-206ENST00000553437 A0A1B0GTH6 734 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 TYW5A2RUC4 315 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 H0Y626 953 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ZBTB24O43167 697 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 MAP3K13O43283 966 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 SYNCRIPO60506 623 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 FOXD2O60548 495 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ENDOD1O94919 500 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 CAVIN2O95810 425 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ATP5BP06576 529 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 POLR2EP19388 210 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 DHPSP49366 369 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 SULT1E1P49888 294 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ATXN1P54253 815 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 CENPCQ03188 943 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ARID5AQ03989 594 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 MTA1Q13330 715 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 CDH18Q13634 790 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 PUM1Q14671 1186 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 CLEC16AQ2KHT3 1053 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 PLEKHG6Q3KR16 790 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 FNDC3BQ53EP0 1204 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 BRMS1LQ5PSV4 323 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 TCEAL6Q6IPX3 200 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 CXorf57Q6NSI4 855 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 SLC36A4Q6YBV0 504 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 LPCAT2Q7L5N7 544 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 IRF2BP2Q7Z5L9 587 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 CIR1Q86X95 450 aaPredicted RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 TMPRSS6Q8IU80 811 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ZNF683Q8IZ20 524 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 APCDD1Q8J025 514 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 CCAR2Q8N163 923 aaKnown RBP10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ZNF366Q8N895 744 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 MSANTD4Q8NCY6 345 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 OR2T3Q8NH03 318 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 TCEAL3Q969E4 200 aa10.61□□□□□ -0.71
CCDC88C-206ENST00000553437 ALG14Q96F25 216 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms