RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NLRP11P59045 1033 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 PPIDQ08752 370 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ATP1A4Q13733 1029 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 OASLQ15646 514 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 KIF19Q2TAC6 998 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DNAL1Q4LDG9 190 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 PRAMEF18Q5VWM3 479 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DSTYKQ6XUX3 929 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 POLNQ7Z5Q5 900 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ANKRD23Q86SG2 305 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 EXOC8Q8IYI6 725 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DIS3LQ8TF46 1054 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 TXLNGYQ9BZA5 131 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 PAIP1Q9H074 479 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 KLC2Q9H0B6 622 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DHX35Q9H5Z1 703 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 SIX2Q9NPC8 291 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 HERC5Q9UII4 1024 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GTF3C4Q9UKN8 822 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 CYP11B1P15538 503 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 SP100P23497 879 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 HOXA7P31268 230 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 RPS6KA3P51812 740 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 COPAP53621 1224 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 RPL10AP62906 217 aaKnown RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DLG4P78352 724 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 BNIP1Q12981 228 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 TNFAIP1Q13829 316 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 FLOT2Q14254 428 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 SGSM1Q2NKQ1 1148 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 FAM102AQ5T9C2 384 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 TLDC1Q6P9B6 456 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 RFWD3Q6PCD5 774 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ZSCAN18Q8TBC5 510 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-203ENST00000547825 FAM81AQ8TBF8 368 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 CYGBQ8WWM9 190 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DTNBP1Q96EV8 351 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GORASP1Q9BQQ3 440 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 ADPGKQ9BRR6 497 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 GPR88Q9GZN0 384 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 KCNMB3Q9NPA1 279 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 AAASQ9NRG9 546 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 HESX1Q9UBX0 185 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 DNPEPQ9ULA0 475 aa5.64□□□□□ -1.51
LIMA1-203ENST00000547825 XIRP2A4UGR9 3374 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 A0A1W2PQU0 124 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 hCG_1984214I3L0E3 225 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 FAM86B2P0C5J1 330 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 KRT3P12035 628 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 MAP4P27816 1152 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 GRK4P32298 578 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 CIITAP33076 1130 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 NUMBP49757 651 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 RGS7P49802 495 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 GALK1P51570 392 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ADARP55265 1226 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF268Q14587 947 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 MORF4L2Q15014 288 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 EPHA7Q15375 998 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 NRF1Q16656 503 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 CEP55Q53EZ4 464 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 LACTB2Q53H82 288 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 COBLL1Q53SF7 1204 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 FSCBQ5H9T9 825 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 WASHC2DQ5SRD0 308 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 WLSQ5T9L3 541 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 LPCAT4Q643R3 524 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PTAR1Q7Z6K3 402 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 TMEM192Q8IY95 271 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF786Q8N393 782 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 AFAP1L2Q8N4X5 818 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 EMC1Q8N766 993 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ZNF713Q8N859 430 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 REPS2Q8NFH8 660 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 GDPD5Q8WTR4 605 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PGBD4Q96DM1 585 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 NLRP4Q96MN2 994 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 UPF3AQ9H1J1 476 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ADNPQ9H2P0 1102 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ARL8BQ9NVJ2 186 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 IP6K2Q9UHH9 426 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 DNAJC16Q9Y2G8 782 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 NUB1Q9Y5A7 615 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 NUMBLQ9Y6R0 609 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 MCM3APO60318 1980 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 UBE4BO95155 1302 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 MSH4O15457 936 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 SNRPAP09012 282 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 CAP2P40123 477 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 STX1BP61266 288 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ROR1Q01973 937 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PLOD1Q02809 727 aaPredicted RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 MTMR1Q13613 665 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PKDCCQ504Y2 493 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 PPM1JQ5JR12 505 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ZBTB41Q5SVQ8 909 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 SWSAP1Q6NVH7 229 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 OTOAQ7RTW8 1153 aa5.63□□□□□ -1.51
LIMA1-203ENST00000547825 ALYREFQ86V81 257 aaKnown RBP5.63□□□□□ -1.51
LIMA1-203ENST00000547825 KIAA2013Q8IYS2 634 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms