RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 UPF3BQ9BZI7 483 aaKnown RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 SH3GLB2Q9NR46 395 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 AFF4Q9UHB7 1163 aaKnown RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 DDX49Q9Y6V7 483 aaKnown RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 NID2Q14112 1375 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 FRMPD4Q14CM0 1322 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 LCTP09848 1927 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 KIAA1217Q5T5P2 1943 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ESYT2A0FGR8 921 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 TRIM43BA6NCK2 446 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ISM1B1AKI9 464 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 VPS4BO75351 444 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 TIMP1P01033 207 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 POMCP01189 267 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 MMP3P08254 477 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 SETSIPP0DME0 302 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ICAM3P32942 547 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 SLC11A2P49281 568 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 CDK7P50613 346 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 EVCP57679 992 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 NLRP5P59047 1200 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ARHGAP1Q07960 439 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 CELF3Q5SZQ8 465 aaKnown RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 GALNT17Q6IS24 598 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 METTL7BQ6UX53 244 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 D2HGDHQ8N465 521 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 SLC15A4Q8N697 577 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 POF1BQ8WVV4 589 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 KBTBD7Q8WVZ9 684 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ATXN2LQ8WWM7 1075 aaKnown RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 TRIM43Q96BQ3 446 aaPredicted RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 MARS2Q96GW9 593 aaKnown RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 INPP4AQ96PE3 977 aaPredicted RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 IMPG2Q9BZV3 1241 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ALDH8A1Q9H2A2 487 aaPredicted RBP7.01□□□□□ -1.29
USP40-202ENST00000409945 HIPK3Q9H422 1215 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ZDHHC8Q9ULC8 765 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 SLC30A1Q9Y6M5 507 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 ALPK3Q96L96 1907 aa7.01□□□□□ -1.29
USP40-202ENST00000409945 AMHP03971 560 aa7□□□□□ -1.29
USP40-202ENST00000409945 CHRM3P20309 590 aa7□□□□□ -1.29
USP40-202ENST00000409945 UBA1P22314 1058 aaKnown RBP7□□□□□ -1.29
USP40-202ENST00000409945 SETQ01105 290 aaPredicted RBP7□□□□□ -1.29
USP40-202ENST00000409945 DAG1Q14118 895 aa7□□□□□ -1.29
USP40-202ENST00000409945 TRIM29Q14134 588 aa7□□□□□ -1.29
USP40-202ENST00000409945 UBE2SQ16763 222 aa7□□□□□ -1.29
USP40-202ENST00000409945 SLC35G1Q2M3R5 365 aa7□□□□□ -1.29
USP40-202ENST00000409945 MFSD5Q6N075 450 aa7□□□□□ -1.29
USP40-202ENST00000409945 PSRC1Q6PGN9 363 aaPredicted RBP7□□□□□ -1.29
USP40-202ENST00000409945 APBB1IPQ7Z5R6 666 aaPredicted RBP7□□□□□ -1.29
USP40-202ENST00000409945 BADQ92934 168 aa7□□□□□ -1.29
USP40-202ENST00000409945 ZSWIM1Q9BR11 485 aa7□□□□□ -1.29
USP40-202ENST00000409945 NELFAQ9H3P2 528 aa7□□□□□ -1.29
USP40-202ENST00000409945 AZI2Q9H6S1 392 aa7□□□□□ -1.29
USP40-202ENST00000409945 CERS4Q9HA82 394 aa7□□□□□ -1.29
USP40-202ENST00000409945 PPCSQ9HAB8 311 aa7□□□□□ -1.29
USP40-202ENST00000409945 HSFX1Q9UBD0 423 aa7□□□□□ -1.29
USP40-202ENST00000409945 DNAH12Q6ZR08 3092 aa7□□□□□ -1.29
USP40-202ENST00000409945 NPEPPSL1A6NEC2 478 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 IFRD1O00458 451 aaPredicted RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 CTAGE5O15320 804 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 ZFPL1O95159 310 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 PLATP00750 562 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 INHBBP09529 407 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 HARSP12081 509 aaKnown RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 ACTN1P12814 892 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 APOBEC3AP31941 199 aaPredicted RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 PSMC6P62333 389 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 TOB2Q14106 344 aaPredicted RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 ICAM4Q14773 271 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 FAM102AQ5T9C2 384 aaPredicted RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 DCAF12L1Q5VU92 463 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 RRAGBQ5VZM2 374 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 EFCAB12Q6NXP0 572 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 USP37Q86T82 979 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 DEPTORQ8TB45 409 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 CAGE1Q8TC20 777 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 MSLNLQ96KJ4 702 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 ZMYND12Q9H0C1 365 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 SMOC2Q9H3U7 446 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 GPR35Q9HC97 309 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 CDYLQ9Y232 598 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 A0A1W2PPC4 97 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 PRR5-ARHGAP8B1AHC4 643 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 PIP5K1CO60331 668 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 IL18RAPO95256 599 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 PIM1P11309 404 aaPredicted RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 RFC2P35250 354 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 RPS19P39019 145 aaKnown RBP6.99□□□□□ -1.29
USP40-202ENST00000409945 SCNN1GP51170 649 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 PTGISQ16647 500 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 LRIT3Q3SXY7 679 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 CEP55Q53EZ4 464 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 JAKMIP3Q5VZ66 844 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 ZDHHC24Q6UX98 284 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 NIPA1Q7RTP0 329 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 PPP1R32Q7Z5V6 425 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 C11orf96Q7Z7L8 435 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 OR6B3Q8NGW1 331 aa6.99□□□□□ -1.29
USP40-202ENST00000409945 ZSCAN18Q8TBC5 510 aaPredicted RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms