RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 FBXO25Q8TCJ0 367 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 DEPDC1BQ8WUY9 529 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 TFB1MQ8WVM0 346 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 BHMTQ93088 406 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 TCEAL4Q96EI5 215 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CEP41Q9BYV8 373 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 FRMD8P1Q9BZ68 369 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 PRDM12Q9H4Q4 367 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CATSPERBQ9H7T0 1116 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 PIDD1Q9HB75 910 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 FAM114A2Q9NRY5 505 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 NDFIP2Q9NV92 336 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 DNAJC17Q9NVM6 304 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 HBS1LQ9Y450 684 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 CPQQ9Y646 472 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 GREB1Q4ZG55 1949 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CCDC195A0A1B0GUA6 201 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 KCNK1O00180 336 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 TSPAN3O60637 253 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 XYLBO75191 536 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 STC2O76061 302 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CNTN5O94779 1100 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 KLKB1P03952 638 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CDC25CP30307 473 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 STIP1P31948 543 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 SERPINB6P35237 376 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CCR2P41597 374 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 HCAR3P49019 387 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 IRAK1P51617 712 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ITGA8P53708 1063 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 BASP1P80723 227 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 RING1Q06587 406 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 MTM1Q13496 603 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 PTK6Q13882 451 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 PDK1Q15118 436 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ALFQ53S48 1182 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 BEND6Q5SZJ8 279 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 KLHDC10Q6PID8 442 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CHRDL2Q6WN34 429 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 EP400NLQ6ZTU2 488 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 GRASPQ7Z6J2 395 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 TMC8Q8IU68 726 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CDKL3Q8IVW4 592 aaPredicted RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 LGI2Q8N0V4 545 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 CCDC110Q8TBZ0 833 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ING5Q8WYH8 240 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 SLCO2A1Q92959 643 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 IGSF8Q969P0 613 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 WBP2Q969T9 261 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 TIFAQ96CG3 184 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 SNF8Q96H20 258 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 C1orf74Q96LT6 269 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 FMO2Q99518 471 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 ANAPC5Q9UJX4 755 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 TTLL3Q9Y4R7 772 aa3.82□□□□□ -1.8
RTN4-208ENST00000404909 MYO18AQ92614 2054 aaKnown RBP3.82□□□□□ -1.8
RTN4-208ENST00000404909 F5H5T6 163 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 GOLGA8MH3BSY2 632 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PPP1R12AO14974 1030 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 IGLV3-27P01718 113 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 RHOP08100 348 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PTPN2P17706 415 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 TACR2P21452 398 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ECHS1P30084 290 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 AVPR1AP37288 418 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 CBX2Q14781 532 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 TEAD2Q15562 447 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 SLC45A4Q5BKX6 768 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 GPR158Q5T848 1215 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 FAXCQ5TGI0 409 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 IZUMO3Q5VZ72 239 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 NADSYN1Q6IA69 706 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PDE12Q6L8Q7 609 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 SYDE1Q6ZW31 735 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 AENQ8WTP8 325 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 HTR3CQ8WXA8 447 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 RUBCNQ92622 972 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 MYEOVQ96EZ4 313 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 FERMT1Q9BQL6 677 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 LRRC3Q9BY71 257 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ZYG11BQ9C0D3 744 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 PCDH9Q9HC56 1237 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ZNF446Q9NWS9 450 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 GRHL1Q9NZI5 618 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 DNMT3BQ9UBC3 853 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 NEU2Q9Y3R4 380 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 TRAV19A0A0A6YYK7 116 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 FGF10O15520 208 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 ACSL4O60488 711 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 TNFRSF8P28908 595 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 SLC6A4P31645 630 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 RPL22P35268 128 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 ZNF135P52742 658 aaPredicted RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 RPS24P62847 133 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 FAM193AP78312 1265 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 ZXDBP98169 803 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 DHX9Q08211 1270 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 PAFAH1B3Q15102 231 aaKnown RBP3.81□□□□□ -1.8
RTN4-208ENST00000404909 SLC5A9Q2M3M2 681 aa3.81□□□□□ -1.8
RTN4-208ENST00000404909 EMBQ6PCB8 327 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms