RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 WDR6Q9NNW5 1121 aaKnown RBP10.16□□□□□ -0.78
SS18-205ENST00000542420 PLLPQ9Y342 182 aa10.16□□□□□ -0.78
SS18-205ENST00000542420 MYO16Q9Y6X6 1858 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 FOXO6A8MYZ6 492 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 TRIM49D1C9J1S8 452 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 SEPT4O43236 478 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 AP1G2O75843 785 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 CABYRO75952 493 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 TM4SF4P48230 202 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 UPP1Q16831 310 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 BRMS1LQ5PSV4 323 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 CHADLQ6NUI6 762 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 DCLRE1AQ6PJP8 1040 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 FAM131BQ86XD5 332 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 PPM1NQ8N819 430 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 COLGALT1Q8NBJ5 622 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 ISL2Q96A47 359 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 KLHL29Q96CT2 875 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 P2RY11Q96G91 374 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 HHIPL1Q96JK4 782 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 SERAC1Q96JX3 654 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 TSGA13Q96PP4 275 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 SMOQ99835 787 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 TSSK1BQ9BXA7 367 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 ULBP1Q9BZM6 244 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 STN1Q9H668 368 aaKnown RBP10.15□□□□□ -0.78
SS18-205ENST00000542420 GOLGA2P5Q9HBQ8 144 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 ETAA1Q9NY74 926 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 SIRPGQ9P1W8 387 aa10.15□□□□□ -0.78
SS18-205ENST00000542420 RNF103O00237 685 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 CAPN9O14815 690 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 RFPL1O75677 317 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 C6orf222P0C671 652 aaPredicted RBP10.15□□□□□ -0.79
SS18-205ENST00000542420 DNAJB1P25685 340 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 SERPINB4P48594 390 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 NRG1Q02297 640 aaPredicted RBP10.15□□□□□ -0.79
SS18-205ENST00000542420 GALNT2Q10471 571 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 IFRD2Q12894 506 aaPredicted RBP10.15□□□□□ -0.79
SS18-205ENST00000542420 FAM47EQ6ZV65 393 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 LRRC49Q8IUZ0 686 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 SMC1BQ8NDV3 1235 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 SRPK1Q96SB4 655 aaKnown RBP10.15□□□□□ -0.79
SS18-205ENST00000542420 PKMYT1Q99640 499 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 RRAGCQ9HB90 399 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 CHKBQ9Y259 395 aa10.15□□□□□ -0.79
SS18-205ENST00000542420 MYO18AQ92614 2054 aaKnown RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 A0A0U1RQF3 1178 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 ARL5CA6NH57 179 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 TMEM189-UBE2V1I3L0A0 370 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 CA12O43570 354 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 HCRTO43612 131 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 GLRA3O75311 464 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 ALDH1A1P00352 501 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 IGLV3-25P01717 112 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 CHRNA1P02708 482 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 FYNP06241 537 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 RARBP10826 455 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 PYGBP11216 843 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 HOXC13P31276 330 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 MLH1P40692 756 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 HADHAP40939 763 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 GARSP41250 739 aaKnown RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 NPY2RP49146 381 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 ATXN1P54253 815 aaKnown RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 MAP3K7CLP57077 242 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 TPI1P60174 286 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 WASHC5Q12768 1159 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 TUSC3Q13454 348 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 KRT72Q14CN4 511 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 FAM133BQ5BKY9 247 aaKnown RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 GNASQ5JWF2 1037 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 ACBD5Q5T8D3 534 aaPredicted RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 KIAA0319Q5VV43 1072 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 GDF6Q6KF10 455 aaPredicted RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 AGMOQ6ZNB7 445 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 PRPF39Q86UA1 669 aaKnown RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 LCA5Q86VQ0 697 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 THEM5Q8N1Q8 247 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 LZTR1Q8N653 840 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 KLHDC9Q8NEP7 349 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 TRPV1Q8NER1 839 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 ZMIZ2Q8NF64 920 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 PCED1BQ96HM7 432 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 OXNAD1Q96HP4 312 aaPredicted RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 ANKRD27Q96NW4 1050 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 GAD1Q99259 594 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 LPIN3Q9BQK8 851 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 TLE6Q9H808 572 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 DMAP1Q9NPF5 467 aaPredicted RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 PIGVQ9NUD9 493 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 NSMCE4AQ9NXX6 385 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 KCNK4Q9NYG8 393 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 THSD7BQ9C0I4 1608 aa10.14□□□□□ -0.79
SS18-205ENST00000542420 GOLGB1Q14789 3259 aaKnown RBP10.14□□□□□ -0.79
SS18-205ENST00000542420 I3L4J1 428 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 CACNG3O60359 315 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ADAMTS4O75173 837 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 ATP6V1G2O95670 118 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 AP2A1O95782 977 aa10.13□□□□□ -0.79
SS18-205ENST00000542420 POLBP06746 335 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms