RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 FCHO1O14526 889 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 ZBTB24O43167 697 aaPredicted RBP17.39■□□□□ 0.38
USP28-208ENST00000540438 GLRBP48167 497 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 ZNF157P51786 506 aaPredicted RBP17.39■□□□□ 0.38
USP28-208ENST00000540438 HSP90AA5PQ58FG0 334 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 N4BP2L1Q5TBK1 243 aaPredicted RBP17.39■□□□□ 0.38
USP28-208ENST00000540438 LRRC52Q8N7C0 313 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 GBP7Q8N8V2 638 aaPredicted RBP17.39■□□□□ 0.38
USP28-208ENST00000540438 HIPK4Q8NE63 616 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 ZNF669Q96BR6 464 aaPredicted RBP17.39■□□□□ 0.38
USP28-208ENST00000540438 GRAMD1AQ96CP6 724 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 PARK7Q99497 189 aaKnown RBP17.39■□□□□ 0.38
USP28-208ENST00000540438 DUSP16Q9BY84 665 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 TXLNGQ9NUQ3 528 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 SFMBT1Q9UHJ3 866 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 PLLPQ9Y342 182 aa17.39■□□□□ 0.38
USP28-208ENST00000540438 RRN3P2A6NIE6 340 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 SORBS2O94875 1100 aaKnown RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 DLDP09622 509 aaKnown RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 WASHC5Q12768 1159 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 PRKD1Q15139 912 aaPredicted RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 FSCN1Q16658 493 aaKnown RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 PREPLQ4J6C6 727 aaPredicted RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 KHDC1Q4VXA5 237 aaKnown RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 GSTCDQ8NEC7 633 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 ZMIZ2Q8NF64 920 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 GSDMBQ8TAX9 411 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 CADM1Q9BY67 442 aaKnown RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 CYLDQ9NQC7 956 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 CHRAC1Q9NRG0 131 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 LOC100653049A0A140TA62 436 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 DFFAO00273 331 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 DCTN3O75935 186 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 KRT34O76011 436 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 JCHAINP01591 159 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 ALDOAP04075 364 aaKnown RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 GSCP56915 257 aaPredicted RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 IRF9Q00978 393 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 STILQ15468 1287 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 SLC25A52Q3SY17 297 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 CST9Q5W186 159 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 PAXIP1Q6ZW49 1069 aaPredicted RBP17.39■□□□□ 0.37
USP28-208ENST00000540438 C2orf69Q8N8R5 385 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 PLEKHA5Q9HAU0 1116 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 TMLHEQ9NVH6 421 aa17.39■□□□□ 0.37
USP28-208ENST00000540438 PRRC2BQ5JSZ5 2229 aaKnown RBP17.38■□□□□ 0.37
USP28-208ENST00000540438 CTGFP29279 349 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 CD52P31358 61 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 MXRA7P84157 204 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 CRYBG2Q8N1P7 616 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 PLD6Q8N2A8 252 aaKnown RBP17.38■□□□□ 0.37
USP28-208ENST00000540438 WDR60Q8WVS4 1066 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 PNPOQ9NVS9 261 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 LOC285556D6RIA3 1793 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 DPYSL4O14531 572 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 GYG2O15488 501 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 MT-CYBP00156 380 aaPredicted RBP17.38■□□□□ 0.37
USP28-208ENST00000540438 FAM200BP0CF97 657 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 CCNB1P14635 433 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 SLC8A3P57103 927 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 ZNF460Q14592 562 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 RASA2Q15283 850 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 FAM110CQ1W6H9 321 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 CTC1Q2NKJ3 1217 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 TIGD5Q53EQ6 642 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 FASTKD1Q53R41 847 aaKnown RBP17.38■□□□□ 0.37
USP28-208ENST00000540438 NOMO2Q5JPE7 1267 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 GDF6Q6KF10 455 aaPredicted RBP17.38■□□□□ 0.37
USP28-208ENST00000540438 RASSF3Q86WH2 238 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 EMID1Q96A84 441 aaPredicted RBP17.38■□□□□ 0.37
USP28-208ENST00000540438 TNIP3Q96KP6 325 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 QKIQ96PU8 341 aaKnown RBP eCLIP17.38■□□□□ 0.37
USP28-208ENST00000540438 SYT15Q9BQS2 421 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 TKTL2Q9H0I9 626 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 XPNPEP3Q9NQH7 507 aa17.38■□□□□ 0.37
USP28-208ENST00000540438 A0A0A0MRY4 1105 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 SMIM35A0A1B0GVV1 85 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 TM9SF1O15321 606 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 CD4P01730 458 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 PDHA1P08559 390 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 ESRRAP11474 423 aaPredicted RBP17.37■□□□□ 0.37
USP28-208ENST00000540438 CLNS1AP54105 237 aaKnown RBP17.37■□□□□ 0.37
USP28-208ENST00000540438 TPI1P60174 286 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 ZBTB17Q13105 803 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 MAP2K5Q13163 448 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 KPNB1Q14974 876 aaKnown RBP17.37■□□□□ 0.37
USP28-208ENST00000540438 TEKT4Q8WW24 435 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 ARNTL2Q8WYA1 636 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 ZNF560Q96MR9 790 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 SPATA13Q96N96 652 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 C11orf84Q9BUA3 381 aaPredicted RBP17.37■□□□□ 0.37
USP28-208ENST00000540438 ZFATQ9P243 1243 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 PLXNB2O15031 1838 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 ARRB2P32121 409 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 PTPN9P43378 593 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 CXCR3P49682 368 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 USP4Q13107 963 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 PDE1CQ14123 709 aaPredicted RBP17.37■□□□□ 0.37
USP28-208ENST00000540438 CRYMQ14894 314 aa17.37■□□□□ 0.37
USP28-208ENST00000540438 SV2CQ496J9 727 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms