RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TMEM196Q5HYL7 178 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 ABHD17BQ5VST6 288 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 FAM90A2PQ658T7 463 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 KIAA0895LQ68EN5 471 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 ITPRIPL1Q6GPH6 555 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 ZNF449Q6P9G9 518 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 CAND1Q86VP6 1230 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 TMTC1Q8IUR5 882 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 TEX9Q8N6V9 391 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 CACTINQ8WUQ7 758 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 AFG1LQ8WV93 481 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 CPT1BQ92523 772 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 TSPY26PQ9H489 355 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 ELAC1Q9H777 363 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 KCNK9Q9NPC2 374 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 WASH6PQ9NQA3 447 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 MRGBPQ9NV56 204 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 KCTD5Q9NXV2 234 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 GGA3Q9NZ52 723 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 GIMAP2Q9UG22 337 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 LMTK2Q8IWU2 1503 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 PIPSLA2A3N6 862 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 PSMD9O00233 223 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 YY2O15391 372 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 HOXC11O43248 304 aaPredicted RBP5.21□□□□□ -1.58
CD44-220ENST00000525688 PPP6R2O75170 966 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 CER1O95813 267 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 TFRCP02786 760 aaKnown RBP5.21□□□□□ -1.58
CD44-220ENST00000525688 RHOP08100 348 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 TMEM225BP0DP42 221 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 GKP32189 559 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 ELF1P32519 619 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 PTGS2P35354 604 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 PBX1P40424 430 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 MAGEA10P43363 369 aaPredicted RBP5.21□□□□□ -1.58
CD44-220ENST00000525688 SEC24CP53992 1094 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 BLOC1S1P78537 153 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 SMC1AQ14683 1233 aaKnown RBP5.21□□□□□ -1.58
CD44-220ENST00000525688 PLCB4Q15147 1175 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 TBCCQ15814 346 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 CCNG2Q16589 344 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 AASDHQ4L235 1098 aaPredicted RBP5.21□□□□□ -1.58
CD44-220ENST00000525688 SPDYAQ5MJ70 313 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 TREML2Q5T2D2 321 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 RNF207Q6ZRF8 634 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 PALM2Q8IXS6 379 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 LRRC71Q8N4P6 559 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.21□□□□□ -1.58
CD44-220ENST00000525688 ADAMTS18Q8TE60 1221 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 ZFPM2Q8WW38 1151 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 ASB10Q8WXI3 467 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 HAS1Q92839 578 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 WDYHV1Q96HA8 205 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 BARD1Q99728 777 aaKnown RBP5.21□□□□□ -1.58
CD44-220ENST00000525688 DBNDD1Q9H9R9 158 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 EHD3Q9NZN3 535 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 ZBTB1Q9Y2K1 713 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 SPATA31D1Q6ZQQ2 1576 aa5.21□□□□□ -1.58
CD44-220ENST00000525688 CEP152O94986 1710 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 KANK1Q14678 1352 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 GPRASP1Q5JY77 1395 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 CAMSAP1Q5T5Y3 1602 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 MYO3AQ8NEV4 1616 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 TNRQ92752 1358 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 LOC105369274A0A096LPK9 316 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 LOC102723532A0A0G2JNH3 316 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 TRIM64A6NGJ6 449 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 TRIM64BA6NI03 449 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 VWC2LB2RUY7 222 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 B4E171 279 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 E7EVH7 732 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 MPPED1O15442 326 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 PMPCBO75439 489 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 TJP3O95049 919 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 NXPH3O95157 252 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 BAG2O95816 211 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 POLBP06746 335 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 TPM2P07951 284 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 JUPP14923 745 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 ZNF20P17024 532 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 SERPINA4P29622 427 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 KIF5BP33176 963 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 FOLR3P41439 243 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 GSTM5P46439 218 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 ZNF132P52740 706 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 VAMP2P63027 116 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 EIF2B5Q13144 721 aaKnown RBP5.2□□□□□ -1.58
CD44-220ENST00000525688 BMPR2Q13873 1038 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 MAP3K21Q5TCX8 1036 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 CCDC144NLQ6NUI1 221 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 CPLX2Q6PUV4 134 aaKnown RBP5.2□□□□□ -1.58
CD44-220ENST00000525688 RRAGAQ7L523 313 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 OR4N4Q8N0Y3 316 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 TOR1AIP2Q8NFQ8 470 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 CSGALNACT1Q8TDX6 532 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 RFKQ969G6 155 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 C3orf49Q96BT1 292 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 CENPTQ96BT3 561 aa5.2□□□□□ -1.58
CD44-220ENST00000525688 MAELQ96JY0 434 aaKnown RBP5.2□□□□□ -1.58
CD44-220ENST00000525688 PBKQ96KB5 322 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms