RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 CCP110O43303 1012 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 MOCS2O96007 188 aaPredicted RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 F9P00740 461 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 IGLV3-27P01718 113 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 SLC2A3P11169 496 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 TFE3P19532 575 aaPredicted RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 GDI1P31150 447 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 CCR1P32246 355 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 RDXP35241 583 aaKnown RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 IFNAR2P48551 515 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 VAV2P52735 878 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 OGDHQ02218 1023 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 FCHO2Q0JRZ9 810 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 ARHGAP29Q52LW3 1261 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 ZC3H12AQ5D1E8 599 aaKnown RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 NUGGCQ68CJ6 796 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 STRADAQ7RTN6 431 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 UNC45BQ8IWX7 931 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 RHOT2Q8IXI1 618 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 TXLNBQ8N3L3 684 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 SLC35G2Q8TBE7 412 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 FNIP1Q8TF40 1166 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 FAM172AQ8WUF8 416 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 RFFLQ8WZ73 363 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 NT5C3BQ969T7 300 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 PGAP3Q96FM1 320 aaPredicted RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 SLC39A13Q96H72 371 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 SHDQ96IW2 340 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 FCRL2Q96LA5 508 aaPredicted RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 PPP1R9BQ96SB3 815 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 CNPY3Q9BT09 278 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 ADAM33Q9BZ11 813 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 TRIM7Q9C029 511 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 BRD9Q9H8M2 597 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 TMEM51Q9NW97 253 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 DUS2Q9NX74 493 aaKnown RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 TBC1D14Q9P2M4 693 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 RAB23Q9ULC3 237 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 REXO2Q9Y3B8 237 aaKnown RBP10.41□□□□□ -0.74
NUP54-203ENST00000504173 PAXBP1Q9Y5B6 917 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 WNT6Q9Y6F9 365 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 TENM4Q6N022 2769 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 COL4A3Q01955 1670 aa10.41□□□□□ -0.74
NUP54-203ENST00000504173 MYO1FO00160 1098 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 KLKB1P03952 638 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 NOP2P46087 812 aaKnown RBP10.4□□□□□ -0.74
NUP54-203ENST00000504173 CXCR3P49682 368 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 ZNF252P-AS1Q0IIN9 211 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 PPP2R5DQ14738 602 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 PDGFRLQ15198 375 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 BRMS1LQ5PSV4 323 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 SH3PXD2AQ5TCZ1 1133 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 Q6ZNB5 142 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 HTR3DQ70Z44 454 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 FAM131BQ86XD5 332 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 DENND1CQ8IV53 801 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 BBS7Q8IWZ6 715 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 KIAA1958Q8N8K9 716 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 ATP6V0D2Q8N8Y2 350 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 OSCP1Q8WVF1 389 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 ZFYVE19Q96K21 471 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 BTBD6Q96KE9 485 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 ZNF830Q96NB3 372 aaPredicted RBP10.4□□□□□ -0.74
NUP54-203ENST00000504173 WDCPQ9H6R7 721 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 OSGEPQ9NPF4 335 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 PIGVQ9NUD9 493 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.4□□□□□ -0.74
NUP54-203ENST00000504173 CALCOCO1Q9P1Z2 691 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 IP6K2Q9UHH9 426 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 SLC12A6Q9UHW9 1150 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 AGO1Q9UL18 857 aaKnown RBP10.4□□□□□ -0.74
NUP54-203ENST00000504173 TFR2Q9UP52 801 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 ZNF510Q9Y2H8 683 aa10.4□□□□□ -0.74
NUP54-203ENST00000504173 KANSL1LA0AUZ9 987 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 RCCD1A6NED2 376 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 TMEM110-MUSTN1A8MSY1 372 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 CHADO15335 359 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 ACSL4O60488 711 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 GREM1O60565 184 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 RNF8O76064 485 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 MTA2O94776 668 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 ENDOD1O94919 500 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 LATS1O95835 1130 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 CCDC175P0C221 793 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 SLC11A2P49281 568 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 HDAC4P56524 1084 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 KIF5AQ12840 1032 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 MTA1Q13330 715 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 EIF4EBP2Q13542 120 aaPredicted RBP10.39□□□□□ -0.75
NUP54-203ENST00000504173 PIGHQ14442 188 aaPredicted RBP10.39□□□□□ -0.75
NUP54-203ENST00000504173 RAB6CQ53S08 254 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 TRIM68Q6AZZ1 485 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 SCYL2Q6P3W7 929 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 BNIPLQ7Z465 357 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 ZCCHC14Q8WYQ9 949 aaKnown RBP10.39□□□□□ -0.75
NUP54-203ENST00000504173 CENPIQ92674 756 aaPredicted RBP10.39□□□□□ -0.75
NUP54-203ENST00000504173 IRF7Q92985 503 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 ATP2A3Q93084 1043 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 AZIN2Q96A70 460 aa10.39□□□□□ -0.75
NUP54-203ENST00000504173 OTUB2Q96DC9 234 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms