RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 NCAPHQ15003 741 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 CHST9Q7L1S5 443 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 CYP2U1Q7Z449 544 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 SORCS1Q8WY21 1168 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 NT5C3BQ969T7 300 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 VPS16Q9H269 839 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 TMEM51Q9NW97 253 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 RRN3Q9NYV6 651 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 XPO7Q9UIA9 1087 aaKnown RBP24.28■■□□□ 1.48
C9orf3-215ENST00000478473 SIK3Q9Y2K2 1263 aa24.28■■□□□ 1.48
C9orf3-215ENST00000478473 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 PES1O00541 588 aaKnown RBP24.27■■□□□ 1.48
C9orf3-215ENST00000478473 MAP3K13O43283 966 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 AP5Z1O43299 807 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 DAB1O75553 588 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 DLDP09622 509 aaKnown RBP24.27■■□□□ 1.48
C9orf3-215ENST00000478473 CD70P32970 193 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 NOS2P35228 1153 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 PTGER3P43115 390 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 COPAP53621 1224 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 JAM2P57087 298 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 RPS24P62847 133 aaKnown RBP24.27■■□□□ 1.48
C9orf3-215ENST00000478473 AASDHQ4L235 1098 aaPredicted RBP24.27■■□□□ 1.48
C9orf3-215ENST00000478473 MBLAC2Q68D91 279 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 APTXQ7Z2E3 356 aaKnown RBP24.27■■□□□ 1.48
C9orf3-215ENST00000478473 ZNF677Q86XU0 584 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 SYT12Q8IV01 421 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 TMEFF1Q8IYR6 380 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 KDM1BQ8NB78 822 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 EPS8L1Q8TE68 723 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 HSD3B7Q9H2F3 369 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 ITM2CQ9NQX7 267 aa24.27■■□□□ 1.48
C9orf3-215ENST00000478473 TYW5A2RUC4 315 aaKnown RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 ATP5BP06576 529 aaKnown RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 TPM2P07951 284 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 CCR1P32246 355 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 DHPSP49366 369 aaPredicted RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 OR6B2Q6IFH4 312 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 SERPINA13PQ6UXR4 307 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 NOP9Q86U38 636 aaKnown RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 MFN1Q8IWA4 741 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 ATP6V0D2Q8N8Y2 350 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 PGAP3Q96FM1 320 aaPredicted RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 ZNF419Q96HQ0 510 aaPredicted RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 SMOC1Q9H4F8 434 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 FBRSQ9HAH7 460 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 PRDM16Q9HAZ2 1276 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 NOCTQ9UK39 431 aaKnown RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 PILRBQ9UKJ0 227 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 INTS6Q9UL03 887 aaKnown RBP24.26■■□□□ 1.47
C9orf3-215ENST00000478473 PLA2G4CQ9UP65 541 aa24.26■■□□□ 1.47
C9orf3-215ENST00000478473 LGALS16A8MUM7 142 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 SYNCRIPO60506 623 aaKnown RBP24.25■■□□□ 1.47
C9orf3-215ENST00000478473 LUC7L3O95232 432 aaKnown RBP24.25■■□□□ 1.47
C9orf3-215ENST00000478473 TACR2P21452 398 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 MATKP42679 507 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 COPB1P53618 953 aaKnown RBP24.25■■□□□ 1.47
C9orf3-215ENST00000478473 LMAN2Q12907 356 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 ARID5BQ14865 1188 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 FKBP15Q5T1M5 1219 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 LYSMD4Q5XG99 296 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 TCEAL6Q6IPX3 200 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 ARCQ7LC44 396 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 TMPRSS6Q8IU80 811 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 TCEAL3Q969E4 200 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 C18orf8Q96DM3 657 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 MYO19Q96H55 970 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 NPY6RQ99463 290 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 SLC6A17Q9H1V8 727 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 DDIT4Q9NX09 232 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 TMEM63CQ9P1W3 806 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 SLC12A6Q9UHW9 1150 aa24.25■■□□□ 1.47
C9orf3-215ENST00000478473 LNP1A1A4G5 178 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 KHNYNO15037 678 aaKnown RBP24.24■■□□□ 1.47
C9orf3-215ENST00000478473 MOCS2O96007 188 aaPredicted RBP24.24■■□□□ 1.47
C9orf3-215ENST00000478473 ASLP04424 464 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 POLR2EP19388 210 aaKnown RBP24.24■■□□□ 1.47
C9orf3-215ENST00000478473 RPL6Q02878 288 aaKnown RBP24.24■■□□□ 1.47
C9orf3-215ENST00000478473 ARID5AQ03989 594 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 STPG1Q5TH74 334 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 TTC39BQ5VTQ0 682 aaPredicted RBP24.24■■□□□ 1.47
C9orf3-215ENST00000478473 OTUD1Q5VV17 481 aaPredicted RBP24.24■■□□□ 1.47
C9orf3-215ENST00000478473 OR2T3Q8NH03 318 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 ERGIC2Q96RQ1 377 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 FAM204AQ9H8W3 233 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 TMEM74BQ9NUR3 256 aa24.24■■□□□ 1.47
C9orf3-215ENST00000478473 WSB2Q9NYS7 404 aaPredicted RBP24.24■■□□□ 1.47
C9orf3-215ENST00000478473 GON4LQ3T8J9 2241 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 EPHB6O15197 1021 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 GRAP2O75791 330 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 EPHX1P07099 455 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 KLK7P49862 253 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 NOMO3P69849 1222 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 ZNF33AQ06730 810 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 C5orf22Q49AR2 442 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 FSCBQ5H9T9 825 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 RAP1GAP2Q684P5 730 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 SLC23A3Q6PIS1 610 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 BNIPLQ7Z465 357 aa24.23■■□□□ 1.47
C9orf3-215ENST00000478473 CHSY1Q86X52 802 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms